Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1624 150 2e-31 seq13975 125 7e-24 seq1209 122 9e-23 seq3855 87.8 2e-12 >seq1624 Length=1641699 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || || || || || || || ||||| ||||||||| |||| ||||| Sbjct 1289306 GAAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGC 1289247 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | | |||| || || | ||||| || ||||| ||| | | Sbjct 1289246 CCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCG 1289187 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| |||| |||||||| |||| Sbjct 1289186 ATCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACT 1289127 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| || |||| |||||||| ||| ||||| ||||||| ||| Sbjct 1289126 ACAACATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 1289074 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 1288845 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 1288786 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 1288785 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1288726 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| ||||| |||||||| || | |||||| | |||||||||| Sbjct 1288725 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAAC 1288666 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| |||||||| ||| ||||| ||||||| ||| Sbjct 1288665 ATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 1288618 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| ||||| ||| Sbjct 1289073 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1289014 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | || ||| Sbjct 1289013 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAG 1288954 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 1288953 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 1288894 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| |||||||| ||| ||||| ||||||| ||| Sbjct 1288893 ATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 1288846 >seq13975 Length=2218286 Score = 125 bits (138), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || ||||||||||||||||| |||||||| || || || | ||| Sbjct 1841451 GAGCCGCTGCTGCGGGACAACCCCCGCCGGTTCGTCATTTTCCCTATCCAGTATCACGAC 1841510 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 1841511 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCGGAGGAGGTG 1841564 >seq1209 Length=4489628 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || || ||||||||| | || || || || Sbjct 1333129 AAAATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCTTAGAGGTTGAGCCC 1333188 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| ||| | || Sbjct 1333189 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAT 1333248 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 1333249 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 1333308 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||||||| | || || || | ||| |||| |||| || || Sbjct 1333309 AATATCCAGAAGGAGTCTACTCTACACTTGGTGCTGCGTCTGAGAGGTGG 1333358 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 1333587 AATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAG 1333646 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||| || ||||| || |||| | Sbjct 1333647 TGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATC 1333705 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || ||||| |||||||| || | ||||||||| ||||||| Sbjct 1333706 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 1333765 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| | || |||| |||| || || Sbjct 1333766 ACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGTCTGAGAGGTGG 1333814 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 1333359 AATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAG 1333418 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| |||||| || || | ||||| || ||||| ||| | || | Sbjct 1333419 TGACACTATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATC 1333477 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || ||||| |||||||| || | ||||||||| ||||||| Sbjct 1333478 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 1333537 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| | || |||| |||| || || Sbjct 1333538 ACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGTCTGAGAGGTGG 1333586 >seq3855 Length=16595505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 3219136 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 3219195 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 3219196 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 3219255 Query 117162 ACGAGG 117167 | |||| Sbjct 3219256 ATGAGG 3219261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | || |||||||||||||| || |||||||| || ||||| ||| Sbjct 3212593 GAGCCTCTTCTCAGAAAAAATCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCCAGAC 3212652 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| |||| |||| || || ||||| | || |||||| Sbjct 3212653 ATATGGAAAATGTACAAACAGGCTCAGGCCTCCTTTTGGACAGCAGAAGAGGTG 3212706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515121520879920