Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1209 114 1e-20 seq1624 109 5e-19 >seq1209 Length=4489628 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | |||||||| || || || ||||| || || |||||| ||| Sbjct 1333344 CAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATC 1333285 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||| || || |||||||||||||| Sbjct 1333284 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 1333225 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 1333224 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCTAAGGTGATGGT 1333165 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||| |||||||| Sbjct 1333164 CTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333132 >seq1624 Length=1641699 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || |||||||| ||| || ||||| ||| || ||||| || ||| Sbjct 1288649 GTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCA 1288708 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || | |||||||||||| || ||||| |||||||| || || || Sbjct 1288709 GCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1288768 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || || ||||||| ||| | || ||||| ||||| || Sbjct 1288769 ACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1288828 Query 118722 TTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 1288829 TTCACGAAAATCTGCATG 1288846 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || |||||||| || || ||||| || || ||||| || || Sbjct 1289105 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 1289164 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||||||||| || ||||| |||||||| || || || Sbjct 1289165 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1289224 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||||||||||| ||| | || ||||| ||||| || Sbjct 1289225 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1289284 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| ||||||||| Sbjct 1289285 TTCACAAAGATCTGCATG 1289302 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || |||||||| || || ||||| || || ||||| || || Sbjct 1288877 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 1288936 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||||||||| || || || |||||||| || || || Sbjct 1288937 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 1288996 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||||||||||| ||| | || ||||| ||||| || Sbjct 1288997 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1289056 Query 118722 TTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 1289057 TTCACGAAAATCTGCATG 1289074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433750207399564