Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2746 132 9e-26 >seq2746 Length=6944011 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||| ||| | || ||||| || ||||| |||||||| ||||| ||||| Sbjct 1287380 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1287321 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || ||||| ||||||||||| ||||||| || || || ||||| ||||| || ||||| Sbjct 1287320 CTGAGGAAGAAATTTAATCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1287261 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| |||||||| ||| |||| || || || Sbjct 1287260 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 1287220 Score = 107 bits (118), Expect = 4e-18 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 1285062 GCTTTTTTTGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGA 1285003 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || |||||| || || ||||||||||| || | || || Sbjct 1285002 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 1284944 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 1284943 ATTGCAATTGGTA 1284931 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| ||||| || || |||| ||||| || ||||| || || Sbjct 1284425 GGTGCAGTTCCATGTGACTATTGGACACACAGCCTTGTCTATTTATATTGATTGTCCTTT 1284366 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || ||||||| Sbjct 1284365 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCTTGTTTGG 1284306 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||||||| Sbjct 1284305 TAACTTCTACTATCGGACATACAAG 1284281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923021773426680