Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3855 105 6e-18 seq13975 95.1 1e-14 >seq3855 Length=16595505 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 3225228 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 3225169 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 3225168 GATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 3225109 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 3225108 TGAAATCAAAAGGATTTTCTG 3225088 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 3219259 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 3219200 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 3219199 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 3219140 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 3219139 ACCACTCTCTCACC 3219126 >seq13975 Length=2218286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||||| ||||| || || || ||||||| ||||| ||| || Sbjct 1844557 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1844498 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 1844497 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1844438 Query 16379 AC 16380 || Sbjct 1844437 AC 1844436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || || Sbjct 1845929 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 1845870 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 1845869 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1845832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462424313506200