Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2317 414 7e-111 seq250 113 3e-20 >seq2317 Length=6109278 Score = 414 bits (458), Expect = 7e-111 Identities = 653/929 (70%), Gaps = 6/929 (1%) Strand=Plus/Plus Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 |||||| ||||||||||||| | || ||| ||| |||||||| |||||||| ||||| Sbjct 5320471 GTTCATTGAGTTCCCACTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGT 5320530 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 |||| | || || || | || || ||||| ||| | || | || ||||| ||||| Sbjct 5320531 CATCCACAACAAAATCGAGATGTTCGAGCGGCTCCTGAGGTCCATCTACGCCCCCCAGAA 5320590 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGG 107853 | | ||||| ||||| || ||| |||||||| | ||||| || | |||| || || Sbjct 5320591 CGTCTACTGCGTCCATGTCGATAGCAAGTCCCCGGCTGACTTCCAGA-AGGCCGTGCGGG 5320649 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 |||| | ||||| ||||||||||||| |||| || ||| |||||||||| Sbjct 5320650 CCATCGTAGCCTGCCTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAATGTGGTTTATG 5320709 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 ||||||||||| | ||||| |||||||| ||||| ||| | ||| || | |||||| | | Sbjct 5320710 CCTCCTGGTCCCGGGTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTACAGAGCCCCG 5320769 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 ||| |||| | ||| | || || || ||||| || || |||||||| |||||||| || | Sbjct 5320770 TGCAATGGCATTACATCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTG 5320829 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 |||| ||| ||||| ||| || || |||| ||||||| |||||||| ||| || | Sbjct 5320830 AGATCATCCGTGCCCTGAAGGTGCTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCT 5320889 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153 | | ||| | | || ||||| |||| | | | ||| | | | || | Sbjct 5320890 CAGCCCTCAAGCAGGAGCGTTGGAAGTACCACCACAAAGTGGGGAAGTTCATCTCCCGGA 5320949 Query 108154 CCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 | |||| ||| || || || | || | ||||||||||| || || || || Sbjct 5320950 CAGCCAAGCAGAAACTGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACGCGTACA 5321009 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273 | |||| | | || ||||| || || || |||| || ||||| | | || | Sbjct 5321010 TCGTGGTCACGCGGGCCTTCGTGCAGCACATCTTCGAGAACCCCACGGCGCAGCAGTTCC 5321069 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCG 108331 | || |||| ||| |||||||| ||||| ||||| || ||||||||||||| | || Sbjct 5321070 TCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCATATCTGGGCCACCCTCAACCGCA 5321129 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| ||| | |||| ||| | | || | || ||||| || |||| ||||||| Sbjct 5321130 TGC-CCG-GCGTGCCGGGCGCCATGCCCCCCAACGACAAGTTCCAGCTCTCGGACATGAA 5321187 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| | || | || |||||||||||||||| ||||| || ||||| ||| ||||| Sbjct 5321188 CGCCCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCC 5321247 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | ||||| | || || | | | |||||||||| |||||||| || ||||| Sbjct 5321248 CTACCCGCCCTGTACGGGCCGGCACCAGCGCTCCATCTGCATCTACGGGGCGGGCGACCT 5321307 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | |||||| |||||| | || ||||||||||| |||||||| ||||| | |||||| || Sbjct 5321308 GCCCTGGATGCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCACGGTGGACGA 5321367 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACC 108600 || ||| ||||| | || ||| ||| Sbjct 5321368 CGCCGCCCTCCAGTGTCTCGACGAGCACC 5321396 >seq250 Length=1455208 Score = 113 bits (124), Expect = 3e-20 Identities = 559/878 (64%), Gaps = 13/878 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 1136713 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 1136654 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| || || || || | | |||||||||||||| | ||||| | Sbjct 1136653 ATTGAGATGCTTGATCGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 1136594 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || |||||| ||||| |||| || || |||| || | || || Sbjct 1136593 CATGTTGACAAGAAGTCTCCAGAATCTTTTTTTACTGCTGTGAAGGGAATAGTCTCATGT 1136534 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || |||||||| ||| ||| Sbjct 1136533 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCCTCATGGAGCAGG 1136474 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | ||||||| ||| | | ||||| | Sbjct 1136473 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTCCAGA-AGAAGTTCAAACTGGAAAT 1136416 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || || | || || || | ||||| || ||||||||||| || || || | Sbjct 1136415 ACCTAATCAACCTCTGTGGCATGGACTTTCCTATAAAGACCAACCAGGAAATAGTAGAGA 1136356 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 | || | || ||| | || ||| | || | || | ||| | ||| Sbjct 1136355 AATTAAAAGCCCTTAAAGGTGAAAATAGTTTAGAAACAGAAAAAATGCCTGTTTATAAAG 1136296 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGA---CACACTGTACCCTACCAGCA-AG 108161 || | |||||| | | | ||||| | | || | | | | || ||| || Sbjct 1136295 AAGTAAGGTGGAAAAAACACCATGAGATTATTGATGGTAAAATAAAGAACACAGGCATAG 1136236 Query 108162 ATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221 | || || | || ||| | | || || || | || | |||||||||||| | Sbjct 1136235 A-CAAAGAACTACCACCTCTCAGTACTCCAATTTTTTCTGGTAGTGCCTATTTTGTAGTT 1136177 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAATCCCAAAGACTGGTTGAATG 108280 || ||||| || |||| ||||| | | | |||| | ||| | |||| || Sbjct 1136176 AGCAGAAGATTTGTAGAATATGTATTAGAAAGCAACAAAATACTTAAG-TTCATTGAGTG 1136118 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG 108340 || |||||||| || ||||| || || |||| ||||| || ||||||| ||| || Sbjct 1136117 GGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGCG-AATCCCTG 1136059 Query 108341 GA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCG 108399 | | || || | ||| || ||||||| | | || ||||||| ||| | | Sbjct 1136058 AAGTCCCGGGTGCAGTTTCTTCTAGTGTCAAGTATGATGTTTCTGACATGAATGCACTGG 1135999 Query 108400 CCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCAC 108459 ||||| | ||||||||||||||| || || || || || || || || || ||| Sbjct 1135998 CCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTATCCAAAGGTGCACCCTACCCAC 1135939 Query 108460 CCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGA 108519 | ||| |||| | || | | |||| ||| |||| || |||||| |||||| Sbjct 1135938 CATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGACCTGAACTGGA 1135879 Query 108520 TTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||| | ||||| ||| |||| || || ||||||||| Sbjct 1135878 TTCTACGAAACCACCACTTCTTTGCCAATAAGTTTGAC 1135841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348204423274158