Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1209 122 7e-23 seq1624 111 1e-19 >seq1209 Length=4489628 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||||||||||| ||| |||||||| ||||||||||| | Sbjct 1333814 CCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1333755 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| || || ||||| Sbjct 1333754 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGA 1333695 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||| ||| Sbjct 1333694 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 1333635 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 1333634 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333588 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||||||||||| ||| |||||||| ||||||||||| | Sbjct 1333586 CCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1333527 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| || || || || Sbjct 1333526 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 1333467 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | |||| | ||| ||| Sbjct 1333466 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCACTGGGCTCAACC 1333407 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 1333406 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333360 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||||||| || || ||||||||| || |||||||| | Sbjct 1333358 CCACCTCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGAC 1333299 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| || || || || Sbjct 1333298 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 1333239 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | | |||| | ||| ||| Sbjct 1333238 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 1333179 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | ||| || ||||| || ||||| |||||||||||||| ||||| || Sbjct 1333178 TCTAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 1333129 >seq1624 Length=1641699 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| || ||||| ||||||||||| ||| ||| |||| |||| Sbjct 1289094 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 1289153 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || ||||| || | || ||||||||| | Sbjct 1289154 GCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 1289213 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 1289214 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1289273 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | ||||| |||||||||||||| |||||||| Sbjct 1289274 CAGTCAGGGTCTTCACAAAGATCTGCATGTT 1289304 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| || ||||| ||||||||||| ||| ||| |||| |||| Sbjct 1288866 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 1288925 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || ||||| || | ||| ||||||||| | Sbjct 1288926 GCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGGA 1288985 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 1288986 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1289045 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||| || || |||||| Sbjct 1289046 CAGTCAGGGTCTTCACGAAAATCTGCATG 1289074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| || ||||| |||||||||||| || ||| | || |||| Sbjct 1288638 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCA 1288697 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| |||| || ||| || ||||| || | || ||||||||| | Sbjct 1288698 GCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 1288757 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | || ||||| | ||| || ||||||| Sbjct 1288758 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGC 1288817 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||| || || |||||| Sbjct 1288818 CAGTCAGGGTCTTCACGAAAATCTGCATG 1288846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395002171213507