Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3855 120 4e-22 seq13975 114 2e-20 seq2827 111 2e-19 seq3519 87.8 2e-12 >seq3855 Length=16595505 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 3219261 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 3219202 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 3219201 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3219142 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 3219141 CAACCACTCTCTCACC 3219126 >seq13975 Length=2218286 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 1844559 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1844500 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 1844499 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1844440 Query 36300 C 36300 | Sbjct 1844439 C 1844439 >seq2827 Length=5943979 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || ||||||||||||||||| ||| Sbjct 3510892 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 3510833 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 3510832 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 3510773 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||| | Sbjct 3510772 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAAC 3510713 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 3510712 TCTATTGTCTCACT 3510699 Score = 104 bits (114), Expect = 3e-17 Identities = 99/126 (79%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 9468 GTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCA 9527 |||||| || |||||||||| || ||||| ||||||||||| || | ||||| || Sbjct 3509572 GTAACATAC---CCTGCTCCAAACTTGCTGAAGTCTCTCTTTGACTGCAAGGTATACGCG 3509516 Query 9528 GTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCA 9587 ||||| ||||||| || |||||||| || || |||||||||| |||| ||||||| Sbjct 3509515 GTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAAGCTTGCAAGACGATGGACACATCA 3509456 Query 9588 TAGAAA 9593 |||||| Sbjct 3509455 TAGAAA 3509450 >seq3519 Length=324677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 166683 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 166624 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 166623 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 166565 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 166564 CTCCAGGTAGATGGC 166550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658048018664280