Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1624 95.1 1e-14 seq3519 87.8 2e-12 >seq1624 Length=1641699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| || ||||| || || || |||| |||||| ||||| || || Sbjct 1288877 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 1288936 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||||||||| || || ||||| ||||| ||| || || Sbjct 1288937 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 1288996 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | |||||||| |||| || Sbjct 1288997 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1289056 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1289057 TTCACGAAAATCTGCAT 1289073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| || ||||| || || || |||| |||||| ||||| || || Sbjct 1289105 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 1289164 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 1289165 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1289224 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | |||||||| |||| || Sbjct 1289225 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1289284 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 1289285 TTCACAAAGATCTGCAT 1289301 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || ||||| || ||||| || ||| || |||| || | ||||| ||||| || || Sbjct 1288649 GTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCA-TCTTCCAGCTGCTTGCC 1288707 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | ||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 1288708 AGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1288767 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| |||| || ||||| | ||| | |||||||| |||| || Sbjct 1288768 CACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 1288827 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1288828 CTTCACGAAAATCTGCAT 1288845 >seq3519 Length=324677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 153677 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACT-TTGAT 153735 ||||| |||||||| | ||||| |||||||||||| || | || ||| | || || | Sbjct 168039 ATATTCCACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAGTTCTGCTGGT 167981 Query 153736 TGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAA 153795 |||| || ||||| |||| ||| ||||| |||||||| |||||||| || || | ||| Sbjct 167980 TGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTCTGTCTGAG 167921 Query 153796 TTTCTATAAT 153805 ||| || || Sbjct 167920 ATTCAATGAT 167911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495969952466400