Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3855 132 7e-26 seq13975 125 1e-23 seq3519 100 4e-16 >seq3855 Length=16595505 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 3219261 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 3219202 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 3219201 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3219142 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 3219141 CAACCACTCTCTCACC 3219126 >seq13975 Length=2218286 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 1844559 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1844500 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 1844499 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1844440 Query 50102 CAAC 50105 | || Sbjct 1844439 CTAC 1844436 >seq3519 Length=324677 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 166683 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 166624 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 166623 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 166565 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 166564 CTCCAGGTAGATGGCAAAAGCCCCGGGTC 166536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||| |||||||| | ||||| || ||||| || || ||||| ||||| || | Sbjct 172080 TACCTGAAACTCTCCAGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTATGGCTCAAT 172021 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| ||||| || |||||||| || || |||||||| || | | | | Sbjct 172020 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 171961 Query 79179 ACTATTTCTAAGACCGTAT 79197 || ||||| | ||||||| Sbjct 171960 GCTGTTTCTGACACCGTAT 171942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718132625213880