Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3519 96.9 4e-15 seq1624 89.7 5e-13 >seq3519 Length=324677 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 157099 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGAT 157157 ||||| |||||||| | ||||| |||||||||||| || ||| ||| | || || | Sbjct 168039 ATATTCCACTATTTCTGTACACAGATTGCTGCATTTGATGG-TCCCCAAGTTCTGCTGGT 167981 Query 157158 TGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAA 157217 |||| || |||||||||| ||| ||||| | ||||||||||||||| || || | ||| Sbjct 167980 TGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTCTGTCTGAG 167921 Query 157218 TTTCTATGAT 157227 ||| ||||| Sbjct 167920 ATTCAATGAT 167911 >seq1624 Length=1641699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 |||| || | ||| | || |||||||| || |||||||| ||| || |||| || | Sbjct 1288631 CGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCA 1288690 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || || || ||||| | ||||| | ||||||||||| || |||||||| || Sbjct 1288691 -TCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 1288749 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || || | | || | ||||| ||||||| || || | || | Sbjct 1288750 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGAT 1288809 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| |||| || || ||||| || ||||| Sbjct 1288810 GGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || |||||||| || |||||||| || || |||| | Sbjct 1288859 CGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 1288918 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| ||||||| | ||||||||||| || || ||||| ||| Sbjct 1288919 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 1288978 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| |||| || || || | || | Sbjct 1288979 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1289038 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| |||| || || ||||| || ||||| Sbjct 1289039 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || |||||||| || |||||||| || || |||| | Sbjct 1289087 CGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 1289146 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 1289147 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1289206 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| |||| || || || | || | Sbjct 1289207 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1289266 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| |||| || || || || || ||||| Sbjct 1289267 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1289301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506918276407440