Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq297 150 3e-31 seq3894 113 6e-20 >seq297 Length=2108252 Score = 150 bits (166), Expect = 3e-31 Identities = 221/309 (72%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || || | | ||| Sbjct 1308248 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTTTGTAAGGAGGCAG 1308307 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| || |||||||| | |||| Sbjct 1308308 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1308367 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || || || || || ||||| || || | ||| | || Sbjct 1308368 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 1308427 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | |||||||||||||| || || |||||||| | |||||| || | ||||| |||| Sbjct 1308428 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 1308486 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 1308487 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 1308546 Query 8977 TTTATTAAT 8985 ||||| || Sbjct 1308547 ATTATTGAT 1308555 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || |||| ||| || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 1310236 ATAAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1310295 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 1310296 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 1310355 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 1310356 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1310415 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| |||||||| ||| Sbjct 1310416 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCGTCAATCATC 1310475 Query 9862 TG 9863 || Sbjct 1310476 TG 1310477 >seq3894 Length=5931135 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| ||||| || |||||||||||||| |||||| Sbjct 3737955 TCTTAACTATCTCAAAGCCAGTTGCTCCACCGAATGTACTGGGTTTCCAGTACTCCGGGG 3737896 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 3737895 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 3737836 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | |||| |||| || || | || || || || ||||||| Sbjct 3737835 TTTCCCCAAAAATGCCATTGGTTTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 3737776 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| ||||||||||| || || Sbjct 3737775 GAGCATCGATGTCTCCATACAG 3737754 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| |||| ||||| || || || || || ||||| ||||| Sbjct 3735595 TCACCAATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 3735536 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||||| | ||||| || | |||||| || | ||||||| || || ||||| Sbjct 3735535 TCCTGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCATACATG 3735476 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 3735475 CAGAGCCCTGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 3735416 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || | | || |||| ||| || ||| | |||| ||||| |||||||||||| Sbjct 3735415 ACGGCAGACGGGTAGACCATATGAACCGGAGCATCGGTGACCAAGGGGGGATACA 3735361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708390472554480