Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2503 95.1 3e-14 >seq2503 Length=4670858 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | ||||| ||| || |||||||||| ||||||||||| Sbjct 1125079 TACAAATGCCAAAGAGCTGTCCGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACG 1125020 Query 111449 TGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 1125019 TGAGTTCCTGGATAAGCAG--GGTTTCAACACCAGAGAGGAGGGGGATTTGGGACCAGTT 1124962 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | |||||||| ||||| |||||| |||||| Sbjct 1124961 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 1124914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303100322960594