Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1209 104 2e-17 seq1624 91.5 1e-13 >seq1209 Length=4489628 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 1333814 CCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1333755 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || ||| ||| Sbjct 1333754 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGA 1333695 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | |||||| Sbjct 1333694 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCAA 1333637 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || || ||||| || || ||||| ||||||||| Sbjct 1333636 CCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333587 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 1333586 CCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1333527 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || || || Sbjct 1333526 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 1333467 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | |||||| | |||||| Sbjct 1333466 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATAGTGTCACTGGGCTCAA 1333409 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || || ||||| || || ||||| ||||||||| Sbjct 1333408 CCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333359 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| || || || |||||||| || || |||||||| | | Sbjct 1333358 CCACCTCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGAC 1333299 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || || || Sbjct 1333298 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 1333239 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | |||||| Sbjct 1333238 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAA 1333181 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || || ||||| ||||||||||| Sbjct 1333180 CCTCTAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 1333129 >seq1624 Length=1641699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||| || || || ||||||||||| | || ||| |||| Sbjct 1289089 CAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 1289148 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 1289149 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 1289208 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | ||||||| Sbjct 1289209 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1289266 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || ||||| || || ||||| |||||||| || Sbjct 1289267 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1289304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||| || || || ||||||||||||| || ||| ||||| Sbjct 1288633 CAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGT----GCGTC 1288688 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || ||||| || |||| |||| ||| || || || | ||| || | Sbjct 1288689 CATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCT 1288748 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | ||| || || | ||| Sbjct 1288749 TGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGT 1288806 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || || ||||||||||| Sbjct 1288807 GATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||| || || || ||||||||||| | || ||| |||| Sbjct 1288861 CAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 1288920 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | || || ||||| Sbjct 1288921 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTC 1288980 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | ||||||| Sbjct 1288981 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1289038 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || || ||||||||||| Sbjct 1289039 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405013120369330