Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1209 170 4e-37 seq1624 163 5e-35 >seq1209 Length=4489628 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||||||| || ||||| || || |||||||| || || || || || | | Sbjct 1333805 AGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1333746 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 1333745 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCC 1333686 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| ||| |||||||| | || || |||| |||| Sbjct 1333685 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 1333626 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||||| || || ||||||||| Sbjct 1333625 ATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333587 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| |||||||| || ||||| || || |||||||| || || | Sbjct 1333588 TTCCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 1333529 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||||||| | |||||| || || || || || || || || || || | Sbjct 1333528 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 1333469 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||||||||||||||| || ||||| ||||||||| ||| || ||||| | || | Sbjct 1333468 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCACTGGGCTCAA 1333409 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||| ||||||||| || || || |||||||| || || ||||||||| Sbjct 1333408 CCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333359 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| ||||||||||| || ||||| || ||||| || || || | Sbjct 1333360 TTCCACCTCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAG 1333301 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||||||| | |||||| || || || || || || || || || || | Sbjct 1333300 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 1333241 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| |||||||| || ||||| |||||||| ||| |||||||| | || | Sbjct 1333240 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 1333181 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||||||| || || || |||||||| || || ||||||||| Sbjct 1333180 CCTCTAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333131 >seq1624 Length=1641699 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || ||||| ||||| |||||||| || ||||| | || | Sbjct 1288628 AGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGT 1288687 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || || ||||| |||||||||||| Sbjct 1288688 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 1288747 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | ||| || || | |||| Sbjct 1288748 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTG 1288807 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 1288808 ATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || ||||| ||||| |||||||| || || || || || | Sbjct 1288856 AGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 1288915 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || ||||| ||||| |||||| Sbjct 1288916 CCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCC 1288975 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || || | |||| Sbjct 1288976 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTG 1289035 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 1289036 ATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || ||||| ||||| |||||||| || || || || || | Sbjct 1289084 AGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 1289143 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || ||||| |||||||||||| Sbjct 1289144 CCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 1289203 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || || | |||| Sbjct 1289204 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTG 1289263 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 1289264 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1289301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921447671913240