Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1624 87.8 1e-12 >seq1624 Length=1641699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || ||||| || |||||||| ||| || || || | ||||| | Sbjct 1288642 ATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG--GACAAGGTGCGTCCATCTTCCAGC 1288699 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || ||||||||| | |||| | ||| || ||| ||||| ||||||||||| || Sbjct 1288700 TGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATC 1288759 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| | || || || || || ||| || || | ||| ||||| || || Sbjct 1288760 TTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCA 1288819 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || ||||| ||||| Sbjct 1288820 GTCAGGGTCTTCACGAAAATCTGCAT 1288845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357325936870595