Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq297 149 9e-31 seq3894 109 8e-19 >seq297 Length=2108252 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 1310236 ATAAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1310295 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || ||||||||||| || || || Sbjct 1310296 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 1310355 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||| ||||| || | ||| || | ||| ||| | || || || | || | Sbjct 1310356 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1310415 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| |||||||| | | Sbjct 1310416 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCGTCAATCATC 1310475 Query 9967 TG 9968 || Sbjct 1310476 TG 1310477 Score = 132 bits (146), Expect = 7e-26 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| || | || || | Sbjct 1308248 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTTTGTAAGGAGGCAG 1308307 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 1308308 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1308367 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || || |||| || ||||| || || | ||| | || Sbjct 1308368 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 1308427 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 1308428 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 1308487 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 1308488 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 1308543 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 1309046 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 1309105 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||||||| | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 1309106 TCAGGCAACAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 1309165 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 1309166 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 1309223 Query 9671 CGCT 9674 | || Sbjct 1309224 CACT 1309227 >seq3894 Length=5931135 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| || ||||||||||||||| |||||||||||||| ||| | | ||||| Sbjct 3737929 CCACCGAATGTACTGGGTTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 3737870 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || || ||| || || | Sbjct 3737869 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATGCCATTGGTTTGG 3737810 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| |||| ||| ||||| || || Sbjct 3737809 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCGATGTCTCCATACAGCTCT 3737750 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 3737749 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 3737717 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| ||||||| | ||||| |||||||| |||| || || ||| || Sbjct 3736345 TCAGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGCGATTCCGG 3736286 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| || || || ||||| | ||| |||||||| | || | || ||||||| Sbjct 3736285 TACTGGAACTGTGTCCCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGTAGTACCCG 3736226 Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| ||||||||||| | | || | || |||||||| ||||| Sbjct 3736225 CTGAGGTGCTGGACATAGTCTTCAATGACGATCTTAATGGTCTCCCC 3736179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723590790217800