Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3519 114 2e-20 >seq3519 Length=324677 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || |||||| || | ||||||| | ||||||| |||||| || || |||| Sbjct 174473 CCTGCTTCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGT 174414 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| ||||||||||| || || ||||||| | | |||||| ||||| |||| | Sbjct 174413 GGATGTTGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTATCTGCTGCCATCTTGAGGA 174354 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | || ||||| || ||||||||||||||||| Sbjct 174353 TAGTTTTCTGGGAGATCTCCCACACCGTCTT 174323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795004448513520