Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3720 102 3e-16 seq3515 91.5 6e-13 seq3894 84.2 9e-11 >seq3720 Length=2626686 Score = 102 bits (112), Expect = 3e-16 Identities = 277/419 (66%), Gaps = 9/419 (2%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | || || || || || || Sbjct 524239 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 524180 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| || ||||| || | || || ||| | || | | | Sbjct 524179 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAA 524121 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | | | || ||| || || || || || ||||| |||||||| | || || || || || Sbjct 524120 GGTGCAGAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCAC 524061 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || |||| | ||||| | || ||||| ||||| || ||||| Sbjct 524060 CAAAGATGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGC 524001 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486 ||||||| |||| ||||| || ||| || ||| | | | | ||| || || | Sbjct 524000 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACGCGGGCTGGAGAGAAGAACGTG 523943 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | | ||||| || || || || ||| |||| || | ||| | ||||| ||||| Sbjct 523942 CTCATCTTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGC 523883 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||| | || |||||| || ||||| || || || || |||| || Sbjct 523882 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 523824 >seq3515 Length=4095612 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || ||||||||||| | || || || || || Sbjct 581184 GTTACTAATGCTGTAGTGACTGTACCAGCGTATTTCAATGACTCTCAGCGTCAGGCTACA 581125 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | ||||| | ||||| || ||||| || || || Sbjct 581124 AAAGATGCTGGAACCATTGCAGGGCTCAATGTCTTGCGAATCATCAATGAGCCAACTGCT 581065 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 581064 GCTGCAATAGCCTATGGTCT 581045 >seq3894 Length=5931135 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| ||||||| || || | ||||| | || ||||| ||||||||| Sbjct 4807428 AAAGCCAAGCCCCATATTCAGGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 4807369 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| ||||| ||||| Sbjct 4807368 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACTGCAGA 4807322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975334464200036