Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3515 132 4e-25 seq2323 96.9 3e-14 >seq3515 Length=4095612 Score = 132 bits (146), Expect = 4e-25 Identities = 366/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 580382 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 580441 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || ||||||| ||| || ||||| | || || Sbjct 580442 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTTGACCCACCAACCAGCACGAT 580500 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || ||||| | ||| | | | ||||| || || || || Sbjct 580501 ATCATGGATCTGCGATTTGTCAAGTTTGGCATCACGCAGAGCCTTTTCCACAGGATCCAG 580560 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 517845 | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 580561 GGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 580618 Query 517846 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 || || ||||| || || | | |||||||| |||||| | | || || ||| | Sbjct 580619 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTACTAGACG 580676 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 517960 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 580677 ACAGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 580736 Query 517961 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 |||| ||| | || | || | |||||| || ||| | | || | Sbjct 580737 CGCTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 580792 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| ||||| || ||||| | ||||| |||| || | | | || | ||| Sbjct 580793 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCGAAG 580852 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 580853 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 580912 Query 518141 AGTACATTCATTTC 518154 || |||||| |||| Sbjct 580913 AGAACATTCCTTTC 580926 Score = 102 bits (112), Expect = 6e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| || | |||||||||||||| ||||| || |||| ||| ||| Sbjct 581036 TTCTTGTCCAGACCATAGGCTATTGCAGCAGCAGTTGGCTCATTGATGATTCGCAAGACA 581095 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| || || || | || || || || ||||| Sbjct 581096 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTAGCCTGACGCTGAGAGTCATTGAAATAC 581155 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 581156 GCTGGTACAGTCACTACAGCATTAGTAAC 581184 >seq2323 Length=161296 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 |||||| || ||| | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 82246 TGTAGTGGCTACAGTGGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 82305 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || |||| ||||||||||||||||| ||||| ||||| Sbjct 82306 TCATTACGGTGCCCCTAAGGAAATGGAAGCCTATTATCAAGAAATTGGGAGAGCTGGTCG 82365 Query 367113 TGATGG 367118 ||||| Sbjct 82366 CGATGG 82371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780069763499902