Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3720 325 5e-84 seq3515 203 4e-47 seq3894 86.0 8e-12 >seq3720 Length=2626686 Score = 325 bits (360), Expect = 5e-84 Identities = 1047/1602 (65%), Gaps = 42/1602 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||||||||| |||| || || || || ||||| ||||| || ||||| || || | Sbjct 522938 TTCATCTTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCGATGTCATCCTT-GC 522996 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 522997 TAAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 523056 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||||| ||||||| |||||||| ||||| | || || | || | ||| || || Sbjct 523057 CAGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCAATCTGGGGGA 523116 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || || |||| ||||| | || || || |||| ||| Sbjct 523117 CTCCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCTAGCAAGTTGTTGTCCT 523176 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTG 6864 ||| | | | ||||| || || || | | | ||| || || || || Sbjct 523177 TCGTCATGGCTCTCTCACCCTCGTATACCTGGACCAGGACACTGCTC--TGGTTGTCCGA 523234 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | |||| | || || || | ||||| || || || | | || | | Sbjct 523235 GTAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGC 523294 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| | ||||| || |||| || || |||||||| || |||||||| || | Sbjct 523295 GGTCATCACTCCACCAGCTGTCTCGATGCCCAGCGACAGAGGGGTGACGTCCAACAGCAG 523354 Query 6985 CAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 ||| || || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 523355 CAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCTCC 523414 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 || || || |||||||||||||| || | || || || ||||| || || || | || Sbjct 523415 ATAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTC 523474 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | ||||| | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 523475 CTGTAACAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTG 523534 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 | | | || || | ||| | || || || | || || || || |||| | Sbjct 523535 GATCTGCCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGAGTGCC 523594 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 |||||| | || | || ||||| || || ||||| ||||| || || ||||| || Sbjct 523595 ACGGAAGAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATAGAGGTGTAGAAGTC 523654 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA--TAA-CGT 7341 || ||| ||||| | || || || |||||| | | ||| ||| ||||| ||| || Sbjct 523655 AATGCCCTCGTAGAGGGAGTCTATCTCAATGCTAGCTTG---CGTGGAAGAGCTAAGGGT 523711 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || | |||||| ||||| || | || | | || ||| ||| || | ||| Sbjct 523712 GCGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACCGCTCGCTTGTTGCCAGCAAT 523771 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATC 7458 || ||| |||||||| || || |||| || | || || | | | | | || Sbjct 523772 GTCACGCTTGTGTTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTC 523828 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 523829 AAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATC 523888 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || |||||||| || || || |||| |||||| ||||| ||||| Sbjct 523889 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTT 523948 Query 7579 CGTATC----GTCGTCTT--TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | || | | | | ||||| || | || || || ||||| || || || || Sbjct 523949 CTTCTCTCCAGCCCGCGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGG 524008 Query 7633 TTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||||| |||||||| | ||| || ||||||| || || | |||||||| || || | Sbjct 524009 CTCATTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCT 524067 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || || || || ||||| || || || || | ||| || | | || || | Sbjct 524068 GGCGCTGAGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACCTTGCGCC 524127 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | ||||| | || || || || ||||| |||||||| ||||| || ||||| || | Sbjct 524128 CCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG 524187 Query 7812 CCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | | || ||| | ||||| || | || |||| | | |||| || || || Sbjct 524188 -GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CA 524240 Query 7871 CCGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAA 7927 || | | ||| | | | ||| | ||||| || || ||| |||| | Sbjct 524241 CCCTCGTTCACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTGGGGTCATCA 524300 Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 |||| | ||||| |||||||| |||||||| | ||||| | |||||||| || Sbjct 524301 TACTTGCGACCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACC 524360 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| || || || || || || || || || || | | Sbjct 524361 TGGTTCTTGGCAGCATCGCCGATGAGGCGCTCCGTA---TCTGTGAAAGCCACATA-GCT 524416 Query 8048 GGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 ||| || || || || || ||||| || || || || || || | | | || |||| Sbjct 524417 GGGTGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGAC 524476 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || ||||| || || || || || |||||||| Sbjct 524477 ACCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 524518 >seq3515 Length=4095612 Score = 203 bits (224), Expect = 4e-47 Identities = 375/546 (69%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 580382 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 580441 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 580442 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTTGACCCACCAACCAGCACGATA 580501 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 |||| | | |||||| || | || | || || || | ||||| ||||| |||| Sbjct 580502 TCATGGATCTGCGATTTGTCAAGTTTGGCATCACGCAGAGCCTTTTCCACAGGATCCAGG 580561 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||||| ||| | ||| || ||||| || || | |||||||||||| Sbjct 580562 GTACC---ACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG 580618 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| || || || | |||||||||||||| | | || | | || || Sbjct 580619 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTACTAGACGAC 580678 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || |||||||| ||||| || || || || | ||||||| || | | ||| || Sbjct 580679 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCG 580738 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTC 7453 || |||||||| || || || || || || || ||||| || || | | | | Sbjct 580739 CTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTT- 580797 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 || || ||||| ||||||||||| ||||| || || || | ||| || || ||||| Sbjct 580798 --GTCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCGAAGATG 580855 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || ||||||| | | | || |||||||| || ||||| || |||||||| || || Sbjct 580856 CCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGA 580915 Query 7574 ACGTTC 7579 || ||| Sbjct 580916 ACATTC 580921 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||||||||||||| | || ||||| || ||||||||| || || || ||||| | | Sbjct 581977 CAAAAACTGTGTTTGTTGGATTCATCGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 582036 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 ||| || || || || || ||||| ||| || || || || || ||||| || | Sbjct 582037 TCTCAGTA---TCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGG 582093 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 |||| ||||| || ||| ||| | || || ||||| ||||| || || || | || Sbjct 582094 CAATGATTTCCACCTTCCCGTGTTGGAATACACCAACGCAGGAATAGGTGGTGCCAAGAT 582153 Query 8136 CAATACCGA 8144 |||| |||| Sbjct 582154 CAATTCCGA 582162 >seq3894 Length=5931135 Score = 86.0 bits (94), Expect = 8e-12 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGGTTC 7993 ||||| || ||||| |||||||| || ||||| | |||||| || || |||||| Sbjct 4807752 CCGATGAGCCGCTTGGCATCAAACACGGTGTTCTCGGGGTT---GGACGTAAGCTGGTTC 4807808 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || ||||||||||| | || || | |||||| || ||||| || || || Sbjct 4807809 TTGGCGGCGTCCCCGATCAAGCGCTCCCCCTCAGGCGTAAATGCCACGTAGGACGGCGTG 4807868 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 | || ||||| |||||||| || || ||||| || ||| | || | ||||||| || Sbjct 4807869 ATGCGGTTCCCCTGGTCGTTGGCGATGATTTCCACCCGGCCATTCTTGAAGACGCCCAC 4807927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635012386760280