Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3519 95.1 2e-14 >seq3519 Length=324677 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 ||||| || |||||||| ||||| || ||||| ||||||||| | || |||| ||||| Sbjct 167920 TCTCAGACAGAGACTGGCACACCGTACATGCTGTACAAAGACTCTTGCAACCGGAAGAGC 167979 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 || || |||| ||||| ||||| | ||| || ||||||||||| |||||| | Sbjct 167980 AACCAGCAGAACTTGGGGACCATCAAATGCAGCAATCTGTGTACAGAAATAGTGGAATAT 168039 Query 112416 ACAGACAAAGATGAG 112430 || |||||||||| Sbjct 168040 ACCAGCAAAGATGAG 168054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620624715000240