Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1209 129 1e-24 seq1624 125 2e-23 seq2341 89.7 1e-12 >seq1209 Length=4489628 Score = 129 bits (142), Expect = 1e-24 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| || ||||| || || || || ||||| || | || || Sbjct 1333809 TCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 1333750 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || || || ||||||||||| Sbjct 1333749 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCC 1333690 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||||||||||||||||||||| ||| || || || Sbjct 1333689 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 1333633 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| ||||||| || || || || | |||||| Sbjct 1333632 CAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333587 Score = 122 bits (134), Expect = 2e-22 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| ||||| ||||| || || |||||||| || | || || Sbjct 1333353 TCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGT 1333294 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || || || || |||||||| Sbjct 1333293 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 1333234 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || || |||||| |||||||||||||| ||| || || || Sbjct 1333233 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 1333177 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||| | ||||| ||||||| || || || || | ||||||| Sbjct 1333176 TAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATTT 1333130 Score = 120 bits (132), Expect = 7e-22 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| || ||||| || || || || ||||| || | || || Sbjct 1333581 TCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 1333522 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || || || || |||||||| Sbjct 1333521 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 1333462 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||||||||||||||| ||||| ||| || || || Sbjct 1333461 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTC---ACTGGGCTCAACCTC 1333405 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| ||||||| || || || || | |||||| Sbjct 1333404 CAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333359 >seq1624 Length=1641699 Score = 125 bits (138), Expect = 2e-23 Identities = 158/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || ||||| ||||| || || ||||| |||| |||| || | |||||||| Sbjct 1288637 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCTTC 1288695 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || || | || || || || ||||||||||| ||||| || Sbjct 1288696 CAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 1288755 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||| || |||||||||||||| ||| ||| || || ||||| | || Sbjct 1288756 GATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCAACCTCGAGGGTGATGGT 1288812 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || ||||| | ||||| Sbjct 1288813 CTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || || ||||| || | || || | || ||||| Sbjct 1288865 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 1288924 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || || || || ||||| ||||| ||||| || Sbjct 1288925 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGG 1288984 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 1288985 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 1289041 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 1289042 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || || ||||| || | || || | || ||||| Sbjct 1289093 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 1289152 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || || || || ||||||||||| ||||| || Sbjct 1289153 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 1289212 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 1289213 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 1289269 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1289270 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1289301 >seq2341 Length=7433655 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | |||||||| ||||||||||| || || | Sbjct 2153666 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 2153607 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||||| || || || |||||||||||| Sbjct 2153606 TAAGTCGCTGCTGATCAGGAGGAATGCCT 2153578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109265997561089