Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13975 123 3e-23 seq3855 105 8e-18 seq3519 89.7 6e-13 >seq13975 Length=2218286 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||| |||||||| || | |||||||| | ||||||||| | Sbjct 1844559 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1844500 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 1844499 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1844440 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 1844439 CTACTACACGTTCTCC 1844424 >seq3855 Length=16595505 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 3219261 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 3219202 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 3219201 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3219142 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 3219141 CAACCACTCTCTCACC 3219126 >seq3519 Length=324677 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 |||||||| | | ||||||| | |||||| | ||| ||||| | |||||||| || Sbjct 168057 TACCTCATCTTTGCTGGTATATTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGT 167998 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 ||||| || || || || | ||| || | ||| ||||| ||||| | ||||| Sbjct 167997 CCCCAAGTTCTGCTGGTTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGT 167938 Query 48026 TCCAGTTTCTATCTGAGATTCAATGAT 48052 ||||| ||| |||||||||||||||| Sbjct 167937 GCCAGTCTCTGTCTGAGATTCAATGAT 167911 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| || | ||||||| || || || | Sbjct 174467 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 174408 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||||||||| || || |||||||| |||||||| | | ||| Sbjct 174407 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTATCTGCTGCCATCTTGAGGATAGTTT 174348 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| || || ||||| | ||| || | ||| || || Sbjct 174347 TCTGGGAGATCTCCCACACCGTCTTATACAGTTGCTTCAAGTCGTCAGG 174299 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||| |||||||| || ||||| || | || || || || || ||||| || || ||| Sbjct 172076 TGAAACTCTCCAGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTATGGCTCAATGGAT 172017 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || || || |||||||| || || || ||||||| | || | | ||| Sbjct 172016 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGGCTG 171957 Query 47448 TTTCTTACTCCATAT 47462 ||||| || || ||| Sbjct 171956 TTTCTGACACCGTAT 171942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562002231197880