Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3515 129 5e-24 seq3720 98.7 8e-15 >seq3515 Length=4095612 Score = 129 bits (142), Expect = 5e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 581184 GTTACTAATGCTGTAGTGACTGTACCAGCGTATTTCAATGACTCTCAGCGTCAGGCTACA 581125 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| | || || |||||||| || |||||| Sbjct 581124 AAAGATGCTGGAACCATTGCAGGGCTCAATGTCTTGCGAATCATCAATGAGCCAACTGCT 581065 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 |||||| | || ||||| || || || Sbjct 581064 GCTGCAATAGCCTATGGTCTGGACAA 581039 >seq3720 Length=2626686 Score = 98.7 bits (108), Expect = 8e-15 Identities = 351/546 (64%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || ||||| | || |||| ||| Sbjct 524518 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 524459 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || ||||| ||||||| Sbjct 524458 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCTTTCACA 524399 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || ||||| || || | || | || || |||||||| Sbjct 524398 GATACGGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 524339 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || ||| | Sbjct 524338 ACCATCTTTGATGCCAAGCGTCTCATCGGTCGCAAGTATGATGACCCCACGGTGCAGTCT 524279 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || || | ||| || || | | ||| Sbjct 524278 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 524219 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 524218 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 524164 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || || | | | || | | || | |||| || | Sbjct 524163 TTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 524104 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || || || ||||||||||| | Sbjct 524103 TCACAGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCA 524044 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | |||||||||||||| || || || ||||| | || |||| Sbjct 524043 TCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 523984 Query 550527 GACTTG 550532 | |||| Sbjct 523983 G-CTTG 523979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028493900636830