Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2503 111 1e-19 >seq2503 Length=4670858 Score = 111 bits (122), Expect = 1e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 1124917 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1124976 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || ||| | ||| ||| ||| |||| || || | || || || || || Sbjct 1124977 CCCCTCCTCTCTGGTGTTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATC 1125036 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 ||| ||||| || ||||| |||| |||||||||| ||||| || || || || || || Sbjct 1125037 CCAAATCTTCACACCCTTTGCGGACAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACA 1125094 Query 30330 CAG 30332 ||| Sbjct 1125095 CAG 1125097 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 1121580 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 1121639 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || |||||||| ||||| || || || | || || | Sbjct 1121640 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 1121699 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || |||||||||||| | |||||| || Sbjct 1121700 AACATAGAACTGGCAAAGGGCGTGGCACGGAGGCAAAGCCATCAG 1121744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408542067930491