Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3519 89.7 1e-12 >seq3519 Length=324677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || || ||||| || || || || || Sbjct 166696 CTGGTTGGTTTCAACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTC 166637 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| || || |||| ||| | | || | ||||||||| ||||| Sbjct 166636 TCTGGCTCGCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTC 166577 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| ||||||| || Sbjct 166576 CAAATGCCACGGCTCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 166533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928668702636480