Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3720 123 2e-22 seq3515 118 7e-21 seq1624 91.5 1e-12 seq1209 87.8 1e-11 >seq3720 Length=2626686 Score = 123 bits (136), Expect = 2e-22 Identities = 363/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || || || || || ||| || || | ||| | || |||| ||| Sbjct 524518 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 524459 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || ||||| ||||| |||| || Sbjct 524458 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCTTTCACA 524399 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || |||||||| || | || | || || ||| || Sbjct 524398 GATACGGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 524339 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| || | | || ||||| || | |||||| |||| || || ||| Sbjct 524338 ACCATCTTTGATGCCAAGCGTCTCATCGGTCGCAAGTATGATGACCCCACGGTGCAGTCT 524279 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 || ||| || ||||| || ||| | || | ||||| || || | | || | Sbjct 524278 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 524219 Query 474627 CAATACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||||| | || || | ||| || || | || || ||||| | Sbjct 524218 GAGTACAAG--GGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTT 524162 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | | || |||| || || Sbjct 524161 ACCAAGATGAAGGAGATTGCTGAG-GCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCAT 524103 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || || ||||| ||||| || || || || |||||||| || | || Sbjct 524102 CACAGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 524043 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || |||||||| | |||||||| ||||| || |||||||| || | || ||||| Sbjct 524042 CACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGG 523983 Query 474865 TCTTGATAAGAA 474876 | || ||||| Sbjct 523982 CTTGGACAAGAA 523971 >seq3515 Length=4095612 Score = 118 bits (130), Expect = 7e-21 Identities = 226/328 (69%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| || ||| ||| || | | | ||||| || Sbjct 580707 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCTAGTACGCAGGCCAGTATTGAAATT 580648 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 580647 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 580588 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| | | ||| | ||| | Sbjct 580587 CTGAATGCTGACCTGTTCCGTGGTACCCTGGATCCTGTGGAAAAGGCTCTGCGTGATGCC 580528 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 |||||||||||||| || ||||||| || || || || || || ||||| | || ||| Sbjct 580527 AAACTTGACAAATCGCAGATCCATGATATCGTGCTGGTTGGTGGGTCAACTCGTATCCCA 580468 Query 475736 AA-AATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || | | ||| || ||| | || || | || ||||| ||| || | || | || | | Sbjct 580467 AAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 580410 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 580409 ATCCTGATGAAGCTGTGGCTTATGGTGC 580382 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 579449 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCT 579390 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 579389 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 579358 >seq1624 Length=1641699 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| ||||| || | || ||||| || ||||| |||||||| Sbjct 1288690 ATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 1288749 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| ||||| || ||| || || | || ||||| || Sbjct 1288750 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGAT 1288809 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| |||||||| || Sbjct 1288810 GGTCTTGCCAGTCAGGGTCTTCACGAAAATCTG 1288842 >seq1209 Length=4489628 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||||| Sbjct 1333515 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 1333456 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||| |||||||| ||| || | | || ||||| || Sbjct 1333455 GTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGAT 1333396 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 1333395 GGTCTTCCCTGTCAGGGTCTTCACAAAGATCTG 1333363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267528613779716