Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq250 224 1e-53 seq2317 163 3e-35 >seq250 Length=1455208 Score = 224 bits (248), Expect = 1e-53 Identities = 601/910 (66%), Gaps = 9/910 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| ||| || || | ||||| || || || |||||| || ||| || | Sbjct 1135789 TGTGTCGCAAATGCTCCTCTAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 1135848 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 1135849 TATTGGCAAAGAAGTGGTG---GTTTCGTAGAATCCAGTTCAGGTCTCCTACCCCAAAAA 1135905 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | |||| Sbjct 1135906 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGATACGT 1135965 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 1135966 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 1136025 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | ||| ||| || | ||| ||||| || || | || || ||||| | || |||||| Sbjct 1136026 ACTTG-ACACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCGCTGAATTGTTGCCCAC 1136084 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| ||| || Sbjct 1136085 AGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGTTG 1136144 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || | || | |||| | || ||||| || || || || || || Sbjct 1136145 CTTTCTAATACATATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 1136204 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || |||||||| || ||||| | || | Sbjct 1136205 ATTGGAGTACTGAGAGGTGGTAGTTCTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 1136264 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || ||| Sbjct 1136265 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCT 1136324 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||| || |||| | || | ||| | | || || || || |||| ||||| | Sbjct 1136325 AAACTATTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 1136384 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAG 160702 |||||||| | || || | ||| || | ||| ||||| || | | || | | | || Sbjct 1136385 GGAAAGTCCATGCCACAGAGGTTGATTAGGTATTTCCAGTTTGAACTTCTTCTGGAG-AG 1136443 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||||||||| | |||||| || || ||||| || |||| Sbjct 1136444 ATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAGGCATACACAACACTCTC 1136503 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 1136504 TAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGTAA 1136562 Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | || | | ||| ||| || || | ||| || | |||||||| || |||| Sbjct 1136563 AAAAAGATTCTGGAGACTTCTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGA 1136622 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | | || || | | || | |||||| || || |||| | ||| || ||||| || | Sbjct 1136623 TTGATCTTAGAAGTCGATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAA 1136682 Query 160942 TCGGAAACTC 160951 | ||||| || Sbjct 1136683 TTGGAAATTC 1136692 >seq2317 Length=6109278 Score = 163 bits (180), Expect = 3e-35 Identities = 606/933 (65%), Gaps = 44/933 (5%) Strand=Plus/Minus Query 160056 TGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAAC 160115 || ||||| ||||| |||| |||| |||| || |||||| || || || || Sbjct 5321394 TGCTCGTCGAGACACTGGAGGGCGGCGTCGTCCACCGTGGGGTCGAACTTGTTGGCCAAG 5321335 Query 160116 AGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAA 160175 || ||||| | ||| || |||||| ||| ||| || | |||| | | ||||| ||| Sbjct 5321334 AGGTGGTGC---TGCTGGAGCATCCAGGGCAGGTCGCCCGCCCCGTAGATGCAGATGGAG 5321278 Query 160176 CGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAG 160235 || |||| ||| | || |||||||| | || || || ||| || || | Sbjct 5321277 CGCTGGTGCCGGCCCGTACAGGGCGGGTAGGGCGCGCCCTTGCTGGTGTCGCCCTCCAGG 5321218 Query 160236 TACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATC 160295 ||||||||||| || | | || | || | |||||| ||| | | | |||| | Sbjct 5321217 TACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGGAACTTGTCGTTG 5321158 Query 160296 AGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCG 160355 |||| | ||| || || ||||||||||| || | ||||||||||| | || ||||| Sbjct 5321157 GGGGGCATGGCGCCCGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAGATATGCTCGTCA 5321098 Query 160356 GGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCTG----TCCCGCA 160410 |||||||| |||||||| | ||| || | ||||| || || | || || || | Sbjct 5321097 GGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGCG----CCGTGGGGTTCTCGAA 5321042 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG-- 160468 | | ||| ||| ||| | || || || | ||||||| |||| | ||| || || Sbjct 5321041 G-ATGTGCTGCACGAAGGCCCGCGTGACCACGATGTACGCGTTGCCCGTGAACATGGGAG 5320983 Query 160469 ---TATGGGTATAGGCGGC-GTGTCT--TTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | |||| |||||| || ||| ||| ||| |||| || | | || Sbjct 5320982 AGTTGTGGG--GTGGCGGCAGTTTCTGCTTG-GCTGTCCGG-----GAGATGA---ACTT 5320934 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-TCCGTCT 160581 | ||| ||| | | |||||| | || |||| | || | || | || | || Sbjct 5320933 CCCCACTTTGTGGTGGTACTTCCAACGCTCCTGCTTGAG-GGCTGAGGGCTTCTCTGACT 5320875 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | | ||||| || | ||| ||||| || |||||| ||| ||||||| Sbjct 5320874 CCATGCTGTTCTGCCCCTGCAGCACCTTCAGGGCACGGATGATCTCAGCGTTGGTCTTGA 5320815 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC-GT-G 160699 || || ||||| ||||| ||| | | ||| | ||||| || | | || || Sbjct 5320814 TGGGGAAATCGGTGCCGCAGGTGTTGAGGATGTAATGCCATT--GCACGGGGCTCTGTAA 5320757 Query 160700 CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTT 160759 ||||||| |||||| || | || |||||||| ||| |||||| || || || || || Sbjct 5320756 CAGGTCCTGCATGCAGTTGAGGTCAGCCTGCACCCGGGACCAGGAGGCATAAACCACATT 5320697 Query 160760 CTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG 160819 || || || ||||||||||| || || || | ||||| || ||| ||| Sbjct 5320696 TTCCAGGCGGCTAGCCACAAAGACATTGGGGAGGCAGGCTACGATGGCCCGCACGGCCTT 5320637 Query 160820 AAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGC 160876 ||| | | || | ||| | || || || ||||| || | |||||| || || Sbjct 5320636 CTGGAA---GTCAGCCGGGGACTTGCTATCGACATGGACGCAGTAGACGTTCTGGGGGGC 5320580 Query 160877 GTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTA 160936 |||||||| ||| || | || |||||||||||| || || | ||||| || || ||||| Sbjct 5320579 GTAGATGGACCTCAGGAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACCATGGAGTA 5320520 Query 160937 GGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 ||| || || ||||| | |||||| | ||||| Sbjct 5320519 GGCGATGGGGAACTCTGCCTCCTCCTGGCTCAG 5320487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577109766454920