Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3720 347 2e-90 seq3515 217 2e-51 seq1209 178 2e-39 seq1624 176 6e-39 seq3894 105 9e-18 seq2341 104 3e-17 >seq3720 Length=2626686 Score = 347 bits (384), Expect = 2e-90 Identities = 1044/1594 (65%), Gaps = 31/1594 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| || || || || ||||| || || ||||| | || ||| Sbjct 524518 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 524459 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || || || || || ||| Sbjct 524458 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCTTTCACA 524399 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| ||||||||||||| ||| Sbjct 524398 GATACGGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 524339 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || |||||||||| | || | || || Sbjct 524338 ACCATCTTTGATGCCAAGCGTCTCATCGGTCGCAAGTATGATGACCCCACGGTGCAGTCT 524279 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || || | ||||| ||||| | | | | Sbjct 524278 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGC----AAGCCCAAGGTGCA 524223 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | ||||||| ||| | || |||| || || || || ||||| Sbjct 524222 AGTGGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 524164 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||||| ||| || | | |||| | ||| | |||| || Sbjct 524163 TTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 524104 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||||||||||| ||| || || || ||||| || || || |||| | | Sbjct 524103 TCACAGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCA 524044 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | ||||||||||| || ||||| ||||| || || ||| Sbjct 524043 TCACTGGCCTTAA-TGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTAT 523985 Query 195836 GGTCTGGACAAGAA-----CAAGGAC-GAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || |||||||||| | || | | ||| || || || | |||||||| | || Sbjct 523984 GGCTTGGACAAGAAAGGTACGCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGA 523925 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || |||||||| || | || | ||||| | ||| || || || || ||| | Sbjct 523924 GGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCC 523865 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTG 196009 || |||||||| || ||||| ||||| || || || || || | | ||||| Sbjct 523864 ACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTT 523805 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || || ||| || || | ||| || ||| |||| || | || | | Sbjct 523804 GTGGAAGAATTCAAGCGTAAACACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGG 523745 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAACA 196126 || || | || || ||||| | || || || || || |||||| ||| ||| | Sbjct 523744 CGACTGCGTACGGCTTGTGAGAGGGCGAAGCGCACCCTTAGCTCTTCCACG---CAAGCT 523688 Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186 | ||||||| || || | | || || ||||||||||| || ||||||| ||||| Sbjct 523687 AGCATTGAGATAGACTCCCTCTACGAGGGCATTGACTTCTACACCTCTATTACTCGTGCC 523628 Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA 196246 || || || ||| | || ||||| | || | | |||| || || || | | Sbjct 523627 CGCTTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACTCTGGAGCCAGTGGAGAAGGCT 523568 Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || ||||| || ||| | || ||| || | | || || || || ||||| || || Sbjct 523567 CTGCGTGATGCCAAGCTAGACAAGGGGCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCC 523508 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAA 196365 || ||||| || ||||| ||| || || || | | |||||||||| ||||| | || Sbjct 523507 ACTCGTATCCCCAAGATCCAAAAGCTG-TTACAGGACTTCTTCAATGGCAAAGAGCTCAA 523449 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | |||||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 523448 CAAGAGCATCAACCCCGATGAGGCTGTTGCTTATGGAGCTGCTGTGCAAGCAGCTAT--C 523391 Query 196426 CTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 |||| | | ||||| | | || || || ||||| ||||| | || || | || | Sbjct 523390 CTCATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGACGTCACCCCTCT 523332 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 || ||||| | || ||||| ||||| || ||||| | || | | ||||| || Sbjct 523331 GTCGCTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGCAACACCAC 523272 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTC 196601 ||||| || || | || ||| | || || || || || || | || |||| | Sbjct 523271 CATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCGGACAACCAGAGCA-GTGTCC 523213 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTT 196661 | || ||||| || || || | || | ||||| ||| | | || || | | Sbjct 523212 TGGTCCAGGTATACGAGGGTGAGAGAGCCATGACGAAGGACAACAACTTGCTAGGCAAGT 523153 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 | || | || || || || | |||||| | || || || |||||| | || || | Sbjct 523152 TTGACCTAACAGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATTGAGGTCACTTTTG 523093 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | || || || ||||| || || || |||| |||| ||||||| | || || Sbjct 523092 ACATCGATGCCAATGGTATCCTGAATGTCAGTGCTGTGGACAAGAGCACGGGTAAGGAGA 523033 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | ||||| || |||||||||||||| || ||| ||||| || || || ||||||| Sbjct 523032 ACAAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATCGACCGTATGG 522973 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 | ||||| || || || |||| | |||||| || Sbjct 522972 TGCAAGAAGCAGAGAAATACAAAGCAGAAGATGA 522939 >seq3515 Length=4095612 Score = 217 bits (240), Expect = 2e-51 Identities = 374/542 (69%), Gaps = 6/542 (1%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || ||||| || |||||||| ||| |||| | ||||||| Sbjct 580920 AATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAA 580861 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || ||||| || || | ||||| ||||||||||| | ||||| ||||| || Sbjct 580860 GATGGCATCTTCGAGGTGAAATCCACTGCAGGTGATACTCACTTGGGTGGAGAAGACTTT 580801 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 || || | || || || || ||| ||| || ||| | |||||||| || Sbjct 580800 GACAACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCGCAAGCACAAGAAAGACATC 580741 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 | || || || ||||||| || | |||||||| || ||||| || || ||| Sbjct 580740 AGCGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACTGCATGCGAGCGTGCAAAGCGTACT 580681 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || || |||| | || | | |||| |||||||| | | ||| || ||||||||| Sbjct 580680 CTGTCGTCTAGTACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTC 580621 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || ||| | |||||| | || || ||||||||| | || |||| |||| | || Sbjct 580620 TACACATCCATTACCAGAGCTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCG---TGGT 580564 Query 196226 A---TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGAT 196282 | |||| ||||| ||| | | || ||||| || || | || || || || | || Sbjct 580563 ACCCTGGATCCTGTGGAAAAGGCTCTGCGTGATGCCAAACTTGACAAATCGCAGATCCAT 580504 Query 196283 GAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGC 196342 || || || || || || || ||||| ||||| || |||||||| | |||| Sbjct 580503 GATATCGTGCTGGTTGGTGGGTCAACTCGTATCCCAAAGATTCAGAAACTGCTGCAGGAT 580444 Query 196343 TTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGT 196402 ||||||||| ||||| | ||||| | ||||| || |||||||| || ||||||||| Sbjct 580443 TTCTTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTATGGT 580384 Query 196403 GC 196404 || Sbjct 580383 GC 580382 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| ||||| || | Sbjct 581177 ATGCTGTAGTGACTGTACCAGCGTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 581118 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||| || || || |||||| |||| |||||||| ||||| || |||||| Sbjct 581117 CTGGAACCATTGCAGGGCTCAA-TGTCTTGCGAATCATCAATGAGCCAACTGCTGCTGCA 581059 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || || ||||||||||||||||| Sbjct 581058 ATAGCCTATGGTCTGGACAAGAA 581036 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 || |||||||||||||| | | || | ||||| ||| | | || || | || || | Sbjct 579512 GTGTATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 579454 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 579453 GACTGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 579394 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| ||||||| | ||||| Sbjct 579393 TGCTAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 579334 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| || ||||||||||| Sbjct 579333 CACGATAACAAATGACAAGGG 579313 >seq1209 Length=4489628 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||| ||||||||| | Sbjct 1333588 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 1333647 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || || |||||||||||||| || |||||| Sbjct 1333648 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 1333707 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| |||| |||||| Sbjct 1333708 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1333767 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| || || || ||| | || || | || | |||||| Sbjct 1333768 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGTCTGAGAGGTGGT 1333815 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||| | ||||||||| | Sbjct 1333132 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCTTAGAGGTTGAGCCCAGT 1333191 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || ||||| |||||||| || |||||| Sbjct 1333192 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 1333251 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| |||| ||||| Sbjct 1333252 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAT 1333311 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||||||||||||| | || || Sbjct 1333312 ATCCAGAAGGAGTCTACTCTACACTTGGTGCT 1333343 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||| ||||||||| | Sbjct 1333360 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 1333419 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || || |||||||||||||| || |||||| Sbjct 1333420 GACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 1333479 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| |||| |||||| Sbjct 1333480 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1333539 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||| | || || Sbjct 1333540 ATCCAGAAGGAATCCACCCTGCACTTGGTCCT 1333571 >seq1624 Length=1641699 Score = 176 bits (194), Expect = 6e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||||||||| ||| | Sbjct 1289301 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1289242 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| ||||||||| Sbjct 1289241 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1289182 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || || ||||| ||||| ||||| ||||| |||| |||||| Sbjct 1289181 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 1289122 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || || ||||| || | || ||||||| Sbjct 1289121 ATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1289075 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| ||||| ||||| || || ||||||||||||||||| | Sbjct 1288845 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 1288786 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| ||||||||| Sbjct 1288785 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1288726 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||||| ||||||||||| ||| | | || |||||| Sbjct 1288725 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAAC 1288666 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || || ||||| || | || ||||||| Sbjct 1288665 ATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1288619 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| ||||| ||||| || || |||||||||||||| ||| | Sbjct 1289073 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1289014 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||| ||||| ||||||||| Sbjct 1289013 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAG 1288954 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || || ||||| ||||| ||||| ||||| |||| |||||| Sbjct 1288953 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 1288894 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || || ||||| || | || ||||||| Sbjct 1288893 ATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1288847 >seq3894 Length=5931135 Score = 105 bits (116), Expect = 9e-18 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| ||||||||| ||| || || || || || Sbjct 4806821 AACAGCTGCTGCCATTGCTTATGGATTGGACAAGAGAGAGGGTGA-GAAGAACATCC-TT 4806764 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| | |||||||| || ||||||||||| || |||| ||||| ||| | Sbjct 4806763 G-TGTTTGACTTGGGTGGTGGAACTTTTGATGTCTCCCTCCTCACAATTGACAATGGAGT 4806705 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||||||| ||||||| |||||| ||||| || ||||| ||||| || || Sbjct 4806704 CTTCGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 4806651 Score = 104 bits (114), Expect = 3e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 |||||||| ||||| || |||||||| ||| | || || || || |||| || | ||| Sbjct 4805088 AAGGATAATCATCTTCTGGGAACTTTTGATCTCACTGGAATCCCTCCTGCCCCTCGTGGT 4805029 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || || |||||| | ||| ||| || ||||| | |||||||| || ||||||||| Sbjct 4805028 GTCCCCCAGATTGAAGTTACCTTTGAAATAGATGTGAATGGAATCCTCCGTGTCACAGCT 4804969 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | ||||| ||||| ||||| || ||||| Sbjct 4804968 GAAGACAAGGGCACTGGGAACAAAAACAAGATCACAATTACAAATGATCAGAATCGGCTG 4804909 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 | || || || || | |||||| | |||||||| |||| | || |||||| || Sbjct 4804908 ACACCAGAAGAGATCGAGAGGATGGTTAATGATGCGGAGAAGTTCGCAGAGGAAGACAAG 4804849 >seq2341 Length=7433655 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 2153578 AGGCATTCCTCCTGATCAGCAGCGACTTATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 2153637 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| ||||| ||||||| Sbjct 2153638 CACGCTGTCTGACTACAATATTCAAAA 2153664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657737677512240