Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1209 122 8e-23 seq1624 105 6e-18 seq3519 95.1 1e-14 >seq1209 Length=4489628 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1333588 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 1333647 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 1333648 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 1333707 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | |||| || || ||| Sbjct 1333708 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1333767 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || |||||||| |||| Sbjct 1333768 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCG 1333802 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1333360 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 1333419 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 1333420 GACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 1333479 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | |||| || || ||| Sbjct 1333480 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1333539 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || |||||||| |||| Sbjct 1333540 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCG 1333574 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | || || || ||| Sbjct 1333132 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCTTAGAGGTTGAGCCCAGT 1333191 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 1333192 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 1333251 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | |||| || || || Sbjct 1333252 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAT 1333311 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || |||||||||||| |||| Sbjct 1333312 ATCCAGAAGGAGTCTACTCTACACTTGGTGCTGCG 1333346 >seq1624 Length=1641699 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 1289301 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1289242 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 1289241 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1289182 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | |||| || || ||| Sbjct 1289181 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 1289122 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || | ||| |||| || | || ||| Sbjct 1289121 ATCCAGAAAGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 1289074 >seq3519 Length=324677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 ||||| || ||||| | ||||| ||| || || ||||| || || || || || || ||| Sbjct 168038 TATTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGGTTG 167979 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct 167978 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 167929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449812305038760