Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1209 143 2e-29 seq1624 122 6e-23 >seq1209 Length=4489628 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | |||||||| ||| | |||| |||||||| ||||| ||||| | Sbjct 1333588 TTCCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 1333529 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| ||||| |||| ||||| ||||| || || |||||||| | ||||| || | | Sbjct 1333528 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 1333469 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || |||||| | || | ||| ||| ||| | Sbjct 1333468 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCACTGGGCTCAA 1333409 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 1333408 CCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333360 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || || |||| | |||||||| ||| | |||| |||||||| ||||| ||||| Sbjct 1333817 TTACCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 1333758 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| ||||| |||| ||||| ||||| || || |||||||| | ||||| || | Sbjct 1333757 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGA 1333698 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || |||||| | || | ||| ||| ||| Sbjct 1333697 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCA 1333638 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 1333637 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333588 Score = 132 bits (146), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | ||| |||| ||| | || ||||||||| || || ||||| | Sbjct 1333360 TTCCACCTCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAG 1333301 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| ||||| |||| ||||| ||||| || || |||||||| | ||||| || | | Sbjct 1333300 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 1333241 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||||||||| | || || ||||| || || || | ||| ||| ||| Sbjct 1333240 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTC 1333183 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 1333182 AACCTCTAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333132 >seq1624 Length=1641699 Score = 122 bits (134), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | |||| || ||||| ||||| ||||| || Sbjct 1289075 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1289134 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| ||||| || || |||||||| | ||||| || | || Sbjct 1289135 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1289194 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || || || || || || | ||| ||| ||||| Sbjct 1289195 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCGA 1289252 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 1289253 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1289302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325632596398373