Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1624 122 7e-23 seq1209 118 8e-22 >seq1624 Length=1641699 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 1288619 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1288678 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || |||||||| | |||| || |||||||| || ||| Sbjct 1288679 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGA 1288738 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || ||| | || | |||||| |||| || Sbjct 1288739 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 1288798 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || || || |||||||| Sbjct 1288799 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 1289075 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1289134 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | |||| || |||||||| || ||| Sbjct 1289135 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1289194 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || ||| | || | |||||| | || || Sbjct 1289195 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 1289254 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || |||||||| | ||| || ||||| |||||||| || Sbjct 1289255 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1289304 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 1288847 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1288906 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | |||| || |||||||| || ||| Sbjct 1288907 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1288966 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | || || ||| | || | |||||| | || || Sbjct 1288967 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 1289026 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || || || |||||||| Sbjct 1289027 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 >seq1209 Length=4489628 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| ||||| || || |||||||| || || ||||| || || | Sbjct 1333814 CCACCTCTCAGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1333755 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || ||||||||||| ||| Sbjct 1333754 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGA 1333695 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || ||||| | || | |||||| | || || Sbjct 1333694 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 1333635 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || | ||| || ||||| ||||||||| Sbjct 1333634 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333587 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| |||||||||||| || || || || || || || || || || || | Sbjct 1333359 TCCACCTCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGA 1333300 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || ||||||||| | |||| || |||||||| || || Sbjct 1333299 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 1333240 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| ||||| || | || |||||| | || | |||||| | || || Sbjct 1333239 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 1333180 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || || || || | ||| || ||||| ||||||||||| Sbjct 1333179 CTCTAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 1333129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385147993073547