Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3515 136 3e-26 seq2323 102 6e-16 >seq3515 Length=4095612 Score = 136 bits (150), Expect = 3e-26 Identities = 367/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 580382 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 580441 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || ||||||| ||| || ||||| | || || Sbjct 580442 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTTGACCCACCAACCAGCACGAT 580500 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || ||||| | ||| | | | ||||| || || || || Sbjct 580501 ATCATGGATCTGCGATTTGTCAAGTTTGGCATCACGCAGAGCCTTTTCCACAGGATCCAG 580560 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 580561 GGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 580618 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || ||||| || || | | |||||||| |||||| | | || || ||| | Sbjct 580619 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTACTAGACG 580676 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 580677 ACAGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 580736 Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 |||| ||| | || | || | |||||| || ||| | | || | Sbjct 580737 CGCTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 580792 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| ||||| || ||||| | ||||| |||| || | | | || | ||| Sbjct 580793 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCGAAG 580852 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 580853 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 580912 Query 282308 AGTACATTCATTTC 282321 || |||||| |||| Sbjct 580913 AGAACATTCCTTTC 580926 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| || | |||||||||||||| ||||| || |||| ||| ||| Sbjct 581036 TTCTTGTCCAGACCATAGGCTATTGCAGCAGCAGTTGGCTCATTGATGATTCGCAAGACA 581095 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| |||||||| || || || | || || || || ||||| Sbjct 581096 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTAGCCTGACGCTGAGAGTCATTGAAATAC 581155 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 581156 GCTGGTACAGTCACTACAGCAT 581177 >seq2323 Length=161296 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 |||||| || ||| | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 82246 TGTAGTGGCTACAGTGGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 82305 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || |||| ||||||||||||||||| ||||| ||||| Sbjct 82306 TCATTACGGTGCCCCTAAGGAAATGGAAGCCTATTATCAAGAAATTGGGAGAGCTGGTCG 82365 Query 131296 TGATGG 131301 ||||| Sbjct 82366 CGATGG 82371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739885764395742