Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3519 93.3 4e-14 seq1624 89.7 5e-13 >seq3519 Length=324677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 151327 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGAT 151385 ||||| |||||||| | ||||| |||||||||||| || ||| ||| | || || | Sbjct 168039 ATATTCCACTATTTCTGTACACAGATTGCTGCATTTGATGG-TCCCCAAGTTCTGCTGGT 167981 Query 151386 TGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAA 151445 |||| || |||||||||| ||| ||||| | ||||||||||||||| || || | ||| Sbjct 167980 TGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTCTGTCTGAG 167921 Query 151446 TTTCTATAAT 151455 ||| || || Sbjct 167920 ATTCAATGAT 167911 >seq1624 Length=1641699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 137255 |||| || | ||| | || |||||||| || |||||||| ||| || |||| || | Sbjct 1288631 CGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCA 1288690 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||||| || || || ||||| | ||||| | ||||||||||| || |||||||| || Sbjct 1288691 -TCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 1288749 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| || || || | | || | ||||| ||||||| || || | || | Sbjct 1288750 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGAT 1288809 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| |||| || || ||||| || ||||| Sbjct 1288810 GGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||| | || |||||||| || |||||||| || || |||| | Sbjct 1288859 CGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 1288918 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || || ||| ||||||| | ||||||||||| || || ||||| ||| Sbjct 1288919 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 1288978 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || || | | || | ||||| |||| || || || | || | Sbjct 1288979 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1289038 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| |||| || || ||||| || ||||| Sbjct 1289039 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||| | || |||||||| || |||||||| || || |||| | Sbjct 1289087 CGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 1289146 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || || ||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 1289147 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1289206 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || || | | || | ||||| |||| || || || | || | Sbjct 1289207 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1289266 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| |||| || || || || || ||||| Sbjct 1289267 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1289301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488451378164400