Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq250 140 4e-28 seq2317 129 7e-25 >seq250 Length=1455208 Score = 140 bits (154), Expect = 4e-28 Identities = 543/846 (64%), Gaps = 22/846 (3%) Strand=Plus/Plus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || ||||| || || ||||| Sbjct 1135878 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCAT 1135937 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | || || || || |||| |||||||| || ||||| Sbjct 1135938 GGTGGGTAGGGTGCACCTTTGGATACGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 1135997 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || || |||||| ||||| || | || || || || || Sbjct 1135998 GCCAGTGCATTCATGTCAGAAACATCATACTTG-ACACTAGAAGAAACTGCACCCGGGAC 1136056 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | || ||| | || |||||||||| || ||||| || || || || || | Sbjct 1136057 TTCAGGGATTCGCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 1136116 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | | || | || || | || Sbjct 1136117 CCACTCAATGAACT---TAAGTATTTTGTTGCTTTCTAATACATATTCTACAAATCTTCT 1136173 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | ||||| Sbjct 1136174 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTCTTT 1136233 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 1136234 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 1136293 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || |||| ||| || ||| | ||| | Sbjct 1136294 TTCTTTA----TAAACAGGCATTTTTTCTGTTTCTAAACTATTTTCACCTTTAAGGGCTT 1136349 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 1136350 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTGA 1136409 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || | | ||||| | | ||||| | || |||| Sbjct 1136410 TTAGGTATTTCCAGTTTGAACTTCTTCTGGAGAGATCTTTCATGCAGTTAATGTCTGCCT 1136469 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || ||||| || ||||| ||| ||| | ||||||||| | Sbjct 1136470 GCACCCTGCTCCATGAGGCATACACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 1136529 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || ||| | || | || || | ||| | | Sbjct 1136530 CAAAACATGAGACTATTCCCTTCACAGC-AGTAAAAAAAGATTCTGGA--GACTTCTTGT 1136586 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | || || | || Sbjct 1136587 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCGATCAAGCA 1136646 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || || || || || || || || || || || | Sbjct 1136647 TCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGC 1136706 Query 162989 TGAGAG 162994 |||||| Sbjct 1136707 TGAGAG 1136712 >seq2317 Length=6109278 Score = 129 bits (142), Expect = 7e-25 Identities = 246/358 (69%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 162629 CCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGAT 162688 ||||||| ||| | ||||| |||||||| | ||| || |||||||||||| | Sbjct 5320850 CCTTCAGGGCACGGATGATCTCAGCGTTGGTCTTGATGGGGAAATCGGTGCCGCAGGTGT 5320791 Query 162689 TAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCG 162747 | | | || | ||| | ||| | || ||| ||| ||||| | ||||| || || Sbjct 5320790 TGAGGATGTAATGCCATTGCACGGGGC-TCTGTAACAGGTCCTGCATGCAGTTGAGGTCA 5320732 Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807 ||||| || || ||| || || || || || | |||| | | || ||||||||| Sbjct 5320731 GCCTGCACCCGGGACCAGGAGGCATAAACCACATTTTCCAGGCGGCTAGCCACAAAGACA 5320672 Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCC 162865 ||| || || | || || || ||||||| ||| || | || | || | Sbjct 5320671 TTGGGGAGGCAGGCTACGATGGCCCGCACGGCCTTCTGGAAGTCAGCCGGG--GACTTGC 5320614 Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925 |||| || || |||||||| | ||||| ||||||||||||| |||||| | | ||||| Sbjct 5320613 TATCGACATGGACGCAGTAGACGTTCTGGGGGGCGTAGATGGACCTCAGGAGCCGCTCGA 5320554 Query 162926 ACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||||| || || | ||| | || || || || || ||||||||||| |||||||| Sbjct 5320553 ACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGGGGAACTCTGCCTCCTC 5320496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578322336523200