Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1624 86.0 1e-11 >seq1624 Length=1641699 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || || || || || || ||||| || ||| Sbjct 1288761 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGATTTTCGCTGGCAAG 1288702 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | || ||| |||| |||||| |||||||||| || || || || Sbjct 1288701 CAGCTGGAAGATGGACGCACCTTGTCCGACTACAACATCCAGAAAGAATCCACCCTGCAT 1288642 Query 206374 CTTGT 206378 ||||| Sbjct 1288641 CTTGT 1288637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181591140087807