Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1209 131 2e-25 seq1624 114 1e-20 >seq1209 Length=4489628 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | | | || |||||| |||| ||| |||||| || || ||||| || | Sbjct 1333360 TTCCACCTCTCAGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAG 1333301 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||| ||| | || ||||||||||| || ||||| |||| || |||||| || | | Sbjct 1333300 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 1333241 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || |||||||||| |||||| ||| | | | | | ||||| || | || | Sbjct 1333240 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 1333181 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| | ||||| || || || |||| || |||||||| ||||||||| Sbjct 1333180 CCTCTAAGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333131 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 1333778 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 1333719 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| |||| ||||| || ||||||||| |||||| ||| | | Sbjct 1333718 ATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1333659 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| ||||| || || || |||| || |||||| Sbjct 1333658 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACA 1333599 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 1333598 AAGATCTGCATTC 1333586 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 1333550 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 1333491 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||| | | Sbjct 1333490 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1333431 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| ||||| || || || |||| || |||||| Sbjct 1333430 TCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACA 1333371 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 1333370 AAGATCTGCATTC 1333358 >seq1624 Length=1641699 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| |||||| || | || ||||||||||| || || || Sbjct 1288655 TCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAA 1288714 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 1288715 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 1288774 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||| ||||| | ||||| || || || |||| || ||||| Sbjct 1288775 TCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 1288834 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1288835 AAAATCTGCAT 1288845 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || |||| ||||||||||| || ||||| Sbjct 1289111 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAG 1289170 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 1289171 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 1289230 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 1289231 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1289290 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1289291 AAGATCTGCAT 1289301 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || |||| ||||||||||| || ||||| Sbjct 1288883 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAG 1288942 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| | ||||||||| |||||| ||||| | | Sbjct 1288943 ATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 1289002 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 1289003 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 1289062 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1289063 AAAATCTGCAT 1289073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450708135168360