Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq297 95.1 2e-14 >seq297 Length=2108252 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| |||||||| ||| | || || || || || ||||| | | | | ||| | Sbjct 1310477 CAGATGATTGACGGAGAAATGTATCCACCAACAGTGAAGGACACTCAGGCAGAGATGATC 1310418 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| || ||| || ||| | || | || | | || | ||| |||| || | Sbjct 1310417 TACCCTCCTCACGTACCTGAACACTTGCAGTTTTCTGTCGGGCAGGAGGTGTTCGGTTTG 1310358 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 || || || || ||| ||||||| | || |||||||| || |||||| |||| || ||| Sbjct 1310357 GTCCCAGGCTTGATGATGTACGCTACAATATGGCTGAGGGAACACAACCGGGTCTGTGAC 1310298 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCA 214221 | |||||||| ||||| || || ||| | || || ||||||||||| Sbjct 1310297 ATCCTGAAACAGGAGCATCCAGAGTGGGATGATGAGCAGCTGTTCCA 1310251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723203663626080