Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3855 138 2e-27 seq13975 134 2e-26 seq3519 89.7 7e-13 seq13275 84.2 3e-11 >seq3855 Length=16595505 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 3219261 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 3219202 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 3219201 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3219142 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 3219141 CAACCACTCTCTCACC 3219126 >seq13975 Length=2218286 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | || | Sbjct 1844559 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1844500 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 1844499 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1844440 Query 39759 CAAC 39762 | || Sbjct 1844439 CTAC 1844436 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||| Sbjct 1845927 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 1845868 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||||| || || ||||||||||| ||||| ||||| Sbjct 1845867 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1845832 >seq3519 Length=324677 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || ||||| | ||||| || ||||| || || ||||| ||||| || | ||| Sbjct 172076 TGAAACTCTCCAGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTATGGCTCAATGGAT 172017 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 |||||||| |||| || |||||||| || ||||||||||| || Sbjct 172016 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 171973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| ||||| | || | ||||||||||| || || || || Sbjct 170473 GAACCCTCATACGTTTCATACGGTCCCTGCTCCTTGGCTAGTTCACAGCTGGCTTCCAAA 170414 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| |||||||| || |||||||| | || || | || || || |||| || Sbjct 170413 GCACCATAATAAATGGTCTCGAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCA 170354 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | | || || |||||||||| ||||| || ||||| || || || Sbjct 170353 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGA 170294 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 | ||| | | || || | |||||| Sbjct 170293 CGATGGCGTCTGTTGGAGCGTTCAGC 170268 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || |||||| || | || || || || || || | Sbjct 174467 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 174408 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||||||||| ||||| || | ||| | | Sbjct 174407 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTATCTGCTGCCATCTTGAGGATAGTTT 174348 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTA 68586 | || | || ||||| | |||||| Sbjct 174347 TCTGGGAGATCTCCCACACCGTCTTA 174322 >seq13275 Length=1050 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| ||||| | || | ||||||||||| || || || || Sbjct 527 GAACCCTCATACGTTTCATACGGTCCCTGCTCCTTGGCTAGTTCACAGCTGGCTTCCAAA 468 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| |||||||| || |||||||| | || || | || || || |||| || Sbjct 467 GCACCATAATAAATGGTCTCGAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCA 408 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | | || || |||||||||| ||||| || ||||| || || || Sbjct 407 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGA 348 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 | ||| | | || || | |||||| Sbjct 347 CGATGGCGTCTGTTGGAGCGTTCAGC 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686778570677880