Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13975 114 1e-20 seq2503 98.7 8e-16 >seq13975 Length=2218286 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 1842325 CAAGAAGTGCAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 1842384 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || |||||||||||| Sbjct 1842385 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATCAAAGAT 1842432 >seq2503 Length=4670858 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || || | || ||||| || ||| ||||||||| ||| Sbjct 1121743 TGATGGCTTTGCCTCCGTGCCACGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 1121684 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 1121683 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 1121624 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 1121623 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 1121587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397382531127835