Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3519 104 3e-17 >seq3519 Length=324677 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 ||||| || |||||||| ||||| |||||||| ||||||||| | || |||| ||||| Sbjct 167920 TCTCAGACAGAGACTGGCACACCGTACATGCTGTACAAAGACTCTTGCAACCGGAAGAGC 167979 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 || || |||| ||||| ||||| | |||||| ||||||||||| |||||| | Sbjct 167980 AACCAGCAGAACTTGGGGACCATCAAATGCAGCAATCTGTGTACAGAAATAGTGGAATAT 168039 Query 105026 ACAGACAAAGATGAG 105040 || |||||||||| Sbjct 168040 ACCAGCAAAGATGAG 168054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583150221043080