Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3515 217 4e-51 seq3720 187 8e-42 seq1209 143 8e-29 seq1624 134 4e-26 seq3894 98.7 3e-15 seq2341 89.7 2e-12 seq13975 84.2 7e-11 seq2033 84.2 7e-11 >seq3515 Length=4095612 Score = 217 bits (240), Expect = 4e-51 Identities = 382/549 (70%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| ||||||| ||||| | || ||||| || |||||||| ||| | || || Sbjct 580926 GAAAGGAATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACT 580867 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || || || || ||| | ||||| |||||||| || | ||||||||| Sbjct 580866 ATTGAAGATGGCATCTTCGAGGTGAAATCCACTGCAGGTGATACTCACTTGGGTGGAGAA 580807 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || ||||| || || | || || || || ||||| ||||| ||||| || | Sbjct 580806 GACTTTGACAACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAA 580748 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || |||||| | |||||||| | ||||| || || ||||| || Sbjct 580747 AGACATCAGCGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACTGCATGCGAGCGTGCAAA 580688 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | || |||| ||| || || |||||||||||||||||| ||| || | Sbjct 580687 GCGTACTCTGTCGTCTAGTACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTAT 580628 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| |||| ||||| | ||||| |||||||| || ||| || || || Sbjct 580627 TGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGA--GCTGAATGCTGACCTGTTC 580570 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || |||||||||||||||| | | ||||| ||| | |||| ||| Sbjct 580569 CGTGGTACCCTGGATCCTGTGGAAAAGGCTCTGCGTGATGCCAAACTTGACAAATCGCAG 580510 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| | || | |||||||| || || ||||| ||||| |||| | | || Sbjct 580509 ATCCATGATATCGTGCTGGTTGGTGGGTCAACTCGTATCCCAAAGATTCAGAAACTGCTG 580450 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || ||||||||||| | | ||| | || ||||| ||||||||||| || Sbjct 580449 CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGC 580391 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 580390 TTATGGTGC 580382 Score = 150 bits (166), Expect = 5e-31 Identities = 355/531 (67%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | ||||||||||| Sbjct 580380 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCATTG 580438 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| | ||| || ||||| ||||| || | |||||| ||||| || | || Sbjct 580439 AAGAAATCCTGCA-GCAGTTTCTGAATCTTTGGGATACGAGTTGACCCACCAACCAGCAC 580497 Query 183380 TACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 | |||| ||| | ||| || || | ||| | | | ||||| ||||| || Sbjct 580498 GATATCATGGATCTGCGATTTGTCAAGTTTGGCATCACGCAGAGCCTTTTCCACAGGATC 580557 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || || | || | || | | |||||| || | ||||| || | |||| Sbjct 580558 CAGGGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGT 580617 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGA 183559 | ||||||||||| | ||| | |||||||||||||| | || ||| || || Sbjct 580618 GTAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTACTAGACGA 580677 Query 183560 TAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATC 183619 | || | || || || || ||||| || | || ||||| | || ||| || || Sbjct 580678 CAGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTC 580737 Query 183620 TGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGT 183679 | || |||| || || || | || ||||||| ||| || || | | | | | Sbjct 580738 GCTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTT 580797 Query 183680 ATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCC 183739 ||||| ||||| ||||| || || ||||| || ||||| | ||| || || || || || Sbjct 580798 GTCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCGAAGATGCC 580857 Query 183740 GTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||||||| | | |||||| |||||||| || ||||| || | ||||| Sbjct 580858 ATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAA 580908 Score = 116 bits (128), Expect = 1e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||| ||||| ||||| | |||||| || Sbjct 581187 ACTGTTACTAATGCTGTAGTGACTGTACCAGCGTATTTCAATGACTCTCAGCGTCAGGCT 581128 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| | |||| || ||||| || ||| Sbjct 581127 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTCTTGCGAATCATCAATGAGCCAACT 581068 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||||| ||||| || ||||| || || || Sbjct 581067 GCTGCTGCAATAGCCTATGGTCTGGACAA 581039 Score = 89.7 bits (98), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || |||| || | ||||| Sbjct 581444 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGACGCTGGCAGACCAAAA 581388 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | ||| ||||| ||||||||||| || || Sbjct 581387 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCCAT 581329 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||| ||| ||||||||||||||||| ||||||||| Sbjct 581328 GGTGTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 581292 >seq3720 Length=2626686 Score = 187 bits (206), Expect = 8e-42 Identities = 794/1242 (64%), Gaps = 23/1242 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| || || || || || || || || | ||| | || ||| Sbjct 524518 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 524459 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || ||||| || || ||| | || || || || || || || || Sbjct 524458 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCTTTCACA 524399 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| | || || ||| |||| || || || | ||| || || | || Sbjct 524398 GATACGGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 524339 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || | |||||||| ||||| || || ||| | | | | |||| | || ||| Sbjct 524338 ACCATCTTTGATGCCAAGCGTCTCATCGGTCGCAAGTATGATGACCCCACGGTGCAGTCT 524279 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || | || || ||| || || || |||| || || | | | Sbjct 524278 GACATGAAGCACTGGCCCTTCCGTGTGGTG---AACGAGGGTGGCAAGCCCAAGGTGCAA 524222 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || || || || ||||| | || || || || || || || || || ||||| | Sbjct 524221 GTGGAGTACAAGGGTGAGATGAAGACC-TTCTTCCCAGAGGAGATCAGCTCCATGGTCCT 524163 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || |||||||| |||||||| || ||| | || | || ||||||| || Sbjct 524162 TACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCAT 524103 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || ||||| | ||||| || || ||||||||||||| ||| Sbjct 524102 CACAGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 524043 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | || | ||||| | | || || ||||| ||||| || || || || || ||||| Sbjct 524042 CACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGG 523983 Query 349738 GCTTG----ATAAA---ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 |||| | ||| | | | | ||| || || | || || ||||| || || | Sbjct 523982 -CTTGGACAAGAAAGGTACGCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAG 523924 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | || ||||||||||| || | || || |||| || || || ||||| || || | | Sbjct 523923 GGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 523864 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | |||||||| || ||||| ||||| || || ||||| || || | || ||||||| Sbjct 523863 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTG 523804 Query 349911 TTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTC 349970 | ||||||| |||||| || || ||| |||| | || |||| || | | Sbjct 523803 TGGAAGAATTCAAGCGTAAACACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGC 523744 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCG-TTCCTTATCATCTACTACCCAAACCTCT 350029 | || | || || ||||| | || ||||| ||||| | ||| | || ||| | Sbjct 523743 GACTGCGTACGGCTTGTGAGAGGGCGAAGCGCACCCTTAGC-TCTTCCACGCAAGCTAGC 523685 Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||| || || || || || |||| || |||| | |||||||| ||||| || Sbjct 523684 ATTGAGATAGACTCCCTCTACGAGGGCATTGACTTCTACACCTCTATTACTCGTGCCCGC 523625 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | | ||||| || | | || |||| || ||||| || | | Sbjct 523624 TTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACTCTGGAGCCAGTGGAGAAGGCTCTG 523565 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 ||||| || | ||| ||||| | || | || | || ||||| || || Sbjct 523564 CGTGATGCCAAGCTAGACAAGGGGCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCACT 523505 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAG 350268 ||||| || || | ||| || | || || || || ||||||||||| | | | || Sbjct 523504 CGTATCCCCAAGATCCAAAAGCTGTTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAG 523445 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | | || || || ||||| |||||||| ||||| |||||||| || ||| |||| | Sbjct 523444 AGC-ATCAACCCCGATGAGGCTGTTGCTTATGGAGCTGCTGTGCAAGCAGCTATCCTCAT 523386 Query 350329 TGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 ||| | ||| ||| | | || | ||||| | || | || || || || || || Sbjct 523385 GGGAGACAAG---TCTGAGAATGTGCAGGATCTGCTGCTGTTGGACGTCACCCCTCTGTC 523329 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 ||| || | || || |||||| ||| ||||| | ||| || Sbjct 523328 GCTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCAT 523287 >seq1209 Length=4489628 Score = 143 bits (158), Expect = 8e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||||||||| || || ||||| || ||||| | || ||||||||||| | Sbjct 1333338 CAAG-TGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCCA 1333280 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || | ||||||||||| ||||| || || || ||||| | Sbjct 1333279 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGA 1333220 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | ||| || ||||| || | || | ||||| | Sbjct 1333219 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCTAAGGTGATGGTCTTCC 1333160 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || ||||| ||||||||| Sbjct 1333159 CTGTCAGGGTCTTCACAAAGATCTGCATT 1333131 Score = 131 bits (144), Expect = 5e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || || || || || || || || ||||| | || |||||||||| Sbjct 1333569 GACCAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTT 1333511 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || ||||||||||| || | ||||||||||| ||||| ||||| || |||| Sbjct 1333510 CCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCT 1333451 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || ||||| | ||| || ||||| || || || | |||| Sbjct 1333450 GGATCTTGGCCTTGACGTTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCT 1333391 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || ||||| ||||||||| Sbjct 1333390 TCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333359 Score = 131 bits (144), Expect = 5e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || || || || || || || || ||||| | || |||||||||| Sbjct 1333797 GACCAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTT 1333739 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || ||||||||||| || | |||||||| |||||||| ||||| || |||| Sbjct 1333738 CCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCT 1333679 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || ||||| | ||| || ||||| || || || | |||| Sbjct 1333678 GGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCT 1333619 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || ||||| ||||||||| Sbjct 1333618 TCCCTGTCAGGGTCTTCACAAAGATCTGCATT 1333587 >seq1624 Length=1641699 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || ||||| || || || || || || || || || |||||| Sbjct 1288634 AGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCT 1288693 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| || || || | |||||||| || ||||| ||||| || ||| Sbjct 1288694 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 1288753 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| |||||||| || || || | ||| Sbjct 1288754 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTC 1288813 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 1288814 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1288845 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || ||||| || || || || ||||| | || || || ||| Sbjct 1288862 AGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 1288921 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 1288922 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCC 1288981 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || || || || | ||| Sbjct 1288982 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1289041 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 1289042 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 1289073 >seq3894 Length=5931135 Score = 98.7 bits (108), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| | || || ||| || || || || || ||| Sbjct 4806820 ACAGCTGCTGCCATTGCTTATGGATTGGACAA---GAGAGAGGGTGAGAAGAACATCCTT 4806764 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 4806763 GTGTTTGACTTGGGTGGTGGAACTTTTGATGTCTCCCTCCTCACAATTGACAATGGAGTC 4806704 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || |||||| || ||| |||||| || || || ||||||||||| ||||| Sbjct 4806703 TTCGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 4806651 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || ||||||||||| || || ||||| |||||||||||||| |||||| | Sbjct 4805900 CAGCCTGGACAGCTGCACCGTAGGCTACAGCCTCATCTGGGTTAATACCACGAGAAGGCT 4805959 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||| ||||| || || ||| | | ||| || ||||| || || | ||| || |||| Sbjct 4805960 CTTTCCCATTGAAGAACTCTTTCACTAGTTGCTGTATTTTGGGGATGCGAGTAGAGCCAC 4806019 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| || | | || | | | ||||||| | |||||| | Sbjct 4806020 CAACAAGAACAATCTCATCAATGTCAGACTTCTTTAGGTCAGAATCTTCCAGAACTTTCT 4806079 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 4806080 GAACAGGCTTCATAGT 4806095 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| ||||||| |||||||| || |||||||| |||||| || |||||||||||| Sbjct 4807012 GCTGTAGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACAAAAGATGCT 4806953 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || | ||||| ||||| ||||| | ||||| || ||||| || Sbjct 4806952 GGTACTATTGCTGGGTTGAATGTGATGAGAATCATCAATGAGCC 4806909 >seq2341 Length=7433655 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||||||||| || ||||| | || || |||||||| || || || |||||||| | Sbjct 2153666 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 2153607 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 2153606 TAAGTCGCTGCTGATCAGGAGGAATGCCT 2153578 >seq13975 Length=2218286 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | ||| || ||||| || | |||||||||||| ||||| | Sbjct 1844562 ATACCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 1844503 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 1844502 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAA 1844443 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 1844442 AAGCTACTA 1844434 >seq2033 Length=2375514 Score = 84.2 bits (92), Expect = 7e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720 ||| |||||||| | ||| |||| ||||| | ||| | || || |||||||| | Sbjct 464920 CATTCCATAGAAGAGTTTCACCTTTTTGCCATTCTTTTCCATAATCTCTCCAGCACACTG 464861 Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCC 130771 ||||| | || ||||||||||||||||| ||||||||||| || ||||| Sbjct 464860 GTCATGGCCTGCAAACATTCCTCCAAGCATGACAAAATCAGCACCGGCTCC 464810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514959944874101