Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq2503 98.7 8e-16 >seq2503 Length=4670858 Score = 98.7 bits (108), Expect = 8e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||||||||| || || || ||||| || || ||||| Sbjct 1121584 CCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACT 1121643 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||| ||||||||||| || || ||||| || || || || | || | | | ||| Sbjct 1121644 CCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACA 1121703 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || ||||| | || || |||||||| |||||| Sbjct 1121704 TAGAACTGGCAAAGGGCGTGGCACGGAGGCAAAGCCATC 1121742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391873149713221