Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2317 257 2e-63 >seq2317 Length=6109278 Score = 257 bits (284), Expect = 2e-63 Identities = 614/921 (67%), Gaps = 12/921 (1%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| ||||| |||||||||||||| || || |||||| |||| Sbjct 5320484 CCACTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAA 5320543 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||| Sbjct 5320544 ATCGAGATGTTCGAGCGGCTCCTGAGGTCCATCTACGCCCCCCAGAACGTCTACTGCGTC 5320603 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 || || || ||||||| | || ||| || ||| |||||||| ||| Sbjct 5320604 CATGTCGATAGCAAGTCCCCGGCTGACTTCCAGAAGGCCGTGCGGGCCATCGTAGCCTGC 5320663 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 |||| || || |||| ||| ||| | | ||||| || | ||||||| || Sbjct 5320664 CTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAATGTGGTTTATGCCTCCTGGTCCCGG 5320723 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 |||||||| ||||||| ||||||| ||||||| |||||| | ||| ||| Sbjct 5320724 GTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTACAGAGCCCCGTGCAATGGCATTAC 5320783 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| ||||| | || ||||| ||||||||||| |||||| | || || Sbjct 5320784 ATCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATCATCCGTGCC 5320843 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAACCACAAGC 14088 ||||||| ||| || ||||| | ||||| || || | | | | || ||||| Sbjct 5320844 CTGAAGGTGCTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCT--CAGCCCTCAAGC 5320901 Query 14089 TGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCA 14148 | | || | | | ||| |||| | | | | || || | | ||| Sbjct 5320902 AGGAGCGTTGGAAGTACCACCACAAAGTGGGGAAGTTCATC-TCCCGGACAGC-CAAGCA 5320959 Query 14149 GGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGG 14208 | ||| ||||| || | || ||||| || |||| ||||| ||| | | || Sbjct 5320960 GAAAC----TGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACGCGTACATCGTGG 5321015 Query 14209 TCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACT 14268 |||| |||| |||||| | | || || || || ||| | | | || | | | Sbjct 5321016 TCACGCGGGCCTTCGTGCAGCACATCTTCGAGAACCCCACGGCGCAGCAGTTCCTCGAGT 5321075 Query 14269 GGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACG 14328 || | ||||||| |||||||| |||||||| | ||||||||| | | | ||| || Sbjct 5321076 GGGCCAAGGACACCTACAGCCCTGACGAGCATATCTGGGCCACCCTCAACCGCATGCCCG 5321135 Query 14329 GGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGG 14388 | ||| || | || ||| ||| ||||| | | |||||||||| ||| | Sbjct 5321136 GCGTGCCGGGCGCCATGCCCCCCAACGACAAGTTCCAGCTCTCGGACATGAACGCCCTGC 5321195 Query 14389 TCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGC 14448 | | | ||||||||||| ||| ||||| || | || || || || | ||||||| Sbjct 5321196 CCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCGC 5321255 Query 14449 CTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGC 14508 | || ||| ||| | | |||||||||||| |||| | |||||| || ||| Sbjct 5321256 CCTGTACGGGCCGGCACCAGCGCTCCATCTGCATCTACGGGGCGGGCGACCTGCCCTGGA 5321315 Query 14509 TG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCC 14567 || ||| | | ||||| || ||||||||||||||| | | |||||| |||| Sbjct 5321316 TGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCACGGTGGACGACGCCGCC 5321374 Query 14568 GTGCGCTGTCTGGACGAGGAC 14588 | | ||||| |||||| || Sbjct 5321375 CTCCAGTGTCTCGACGAGCAC 5321395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658614311281920