Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2503 91.5 1e-13 >seq2503 Length=4670858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 1124927 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 1124986 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 1124987 CTGGTGTTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 1125046 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | || ||||| |||| Sbjct 1125047 ACACCCTTTGCGGACAGCTCTTTGG 1125071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| ||||| || | ||| |||||||| ||||| ||| | || || || || || | Sbjct 1125071 CCAAAGAGCTGTCCGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 1125012 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 1125011 TGGATAAGCAGGGTTTCAACACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 1124952 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 1124951 AGTGGAGGCACTTTGGAGCAGAATA 1124927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448177415052240