Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1624 111 1e-19 >seq1624 Length=1641699 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| ||||| ||||| ||| Sbjct 1288845 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 1288786 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| ||||| | || || ||||| Sbjct 1288785 GACACCATTGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 1288727 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| || |||||||| | |||||| || ||| ||||| Sbjct 1288726 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAA 1288667 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 1288666 CATCCAGAAAGAATCCAC 1288649 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 1289073 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1289014 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| |||||| | || || ||||| Sbjct 1289013 GACACCATTGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCA 1288955 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||||| |||||| | || ||||| Sbjct 1288954 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAA 1288895 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 1288894 CATCCAGAAAGAATCCAC 1288877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337947119664836