Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2503 114 1e-20 >seq2503 Length=4670858 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 1121580 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 1121639 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||| ||||| ||||| || | || || | Sbjct 1121640 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 1121699 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||| ||||||||||| | ||||| ||| Sbjct 1121700 AACATAGAACTGGCAAAGGGCGTGGCACGGAGGCAAAGCCATCAGA 1121745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || || || ||||||| || ||||| || ||| | ||| Sbjct 1124939 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGTTGAAA 1124998 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| || Sbjct 1124999 CCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGCG 1125058 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 || |||||||||| ||||| || || || || || ||||| Sbjct 1125059 GACAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 1125097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406088121620962