Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13975 116 3e-21 seq3855 107 2e-18 >seq13975 Length=2218286 Score = 116 bits (128), Expect = 3e-21 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || |||||||||||||| || | ||| |||||||| || Sbjct 1844566 ATTCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 1844508 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 1844507 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 1844448 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 1844447 TGCAAAAGCTACTA 1844434 >seq3855 Length=16595505 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 3219259 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 3219200 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 3219199 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 3219140 Query 4692 AC 4693 || Sbjct 3219139 AC 3219138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||| || || || || ||||||||||||||||| |||| || Sbjct 3214519 AAAGCTTTCTCACCAGGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 3214460 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 |||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 3214459 TATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 3214400 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 3214399 ACAAATCAAC 3214390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426970660815611