Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq297 167 3e-36 seq3894 118 2e-21 >seq297 Length=2108252 Score = 167 bits (184), Expect = 3e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || |||| ||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 1310236 ATAAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1310295 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 1310296 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 1310355 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 1310356 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1310415 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| |||||||||||| Sbjct 1310416 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCGTCAATCATC 1310475 Query 9484 TG 9485 || Sbjct 1310476 TG 1310477 Score = 147 bits (162), Expect = 3e-30 Identities = 176/235 (75%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||| |||||||||||| | ||||||||||| | || Sbjct 1308322 AAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGGAGCAGATAGCATTT 1308381 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || || || || |||||||| || || | ||| | || | |||||||||||| Sbjct 1308382 CCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTGTTTCACCGAAGATG 1308441 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || || || |||||||| | |||||| || | ||||||||||| ||| || | ||| Sbjct 1308442 GCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCCATAGCATCAATGTC 1308500 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAAT 8595 ||| ||||| | ||||| || || || || ||||||||||| ||||| || Sbjct 1308501 TCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAATTATTGAT 1308555 >seq3894 Length=5931135 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| |||| |||||||| || ||||| || ||||| ||||| Sbjct 3735595 TCACCAATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 3735536 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||||| | ||||| || | |||||| || | ||||||| ||||| ||||| Sbjct 3735535 TCCTGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCATACATG 3735476 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 3735475 CAGAGCCCTGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 3735416 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | | || |||| ||| || ||| | | || ||||| |||||||||||| || Sbjct 3735415 ACGGCAGACGGGTAGACCATATGAACCGGAGCATCGGTGACCAAGGGGGGATACACCTCT 3735356 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 3735355 CCATCCACCACCT 3735343 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| |||||||||||||| ||| | | || | Sbjct 3737931 CTCCACCGAATGTACTGGGTTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCAAGAAGCC 3737872 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| || ||||| || | ||| | ||||| || || || ||| | |||| Sbjct 3737871 CCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATGCCATTGGTTT 3737812 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| || || | || || || || | ||||| ||| |||| |||||| || || Sbjct 3737811 GGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCGATGTCTCCATACAG 3737754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716740889119680