Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1624 154 4e-32 seq1209 140 8e-28 >seq1624 Length=1641699 Score = 154 bits (170), Expect = 4e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || |||||||||||||| ||| | ||| Sbjct 1288842 CAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGTGAC 1288783 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| ||||| || || || || ||||| Sbjct 1288782 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAG 1288723 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | || || ||||| || || ||||| ||||||||| | || |||| |||| || ||| | Sbjct 1288722 AGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGCAC-CTTGTCCGACTACAACAT 1288664 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||||||| || ||||||||||| Sbjct 1288663 CCAGAAAGAATCCACCCTGCATCTTGT 1288637 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||||||||| || || ||| Sbjct 1289070 CAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 1289013 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 1289012 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAGC 1288953 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| ||| | || || | || || ||| Sbjct 1288952 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAACA 1288893 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 1288892 TCCAGAAAGAATCCACCCTGCATCTTGT 1288865 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 1289298 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 1289241 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 1289240 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 1289181 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| ||| | || || | || || ||| Sbjct 1289180 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAACA 1289121 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 1289120 TCCAGAAAGAATCCACCCTGCATCTTGT 1289093 >seq1209 Length=4489628 Score = 140 bits (154), Expect = 8e-28 Identities = 157/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 1333591 CAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 1333648 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || |||||||| |||| Sbjct 1333649 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 1333708 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 1333709 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1333768 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 1333769 TCCAGAAGGAATCCACCCTGCA-CTTG 1333794 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 1333363 CAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 1333420 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||||||||| ||||| |||||||| ||||| || || || || |||| Sbjct 1333421 ACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 1333480 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 1333481 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1333540 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 1333541 TCCAGAAGGAATCCACCCTGCA-CTTG 1333566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203497282301398